Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g501 ATGGCGACAATGGAGAGCTTGATCGGACTCGTCAACAGAATCCAGAGAGCCTGCACCGTCCTAGGCGATCACGGTGGCGAAGGAATGTCCCTCTGGGAAGCTCTTCCTTCTGTTGCTGTTGTAGGAGGCCAGAGCTCTGGGAAATCGTCTGTGTTGGAAAGCGTGGTTGGAAGGGACTTCCTGCCTCGTGGATCCGGCATTGTGACAAGGAGGCCTCTGGTATTGCAACTTCACAAGACAGAACAAGGGCAGGCCGAATATGGGGAGTTTCTTCACGCACCAAAAAAGAAGTTTACTGATTTTGCTTCCGTCCGTAAGGAGATTCAAGATGAAACAGACCGTATAACTGGGAAGACAAAGCACATATCTAACATTCCAATTCACCTGAGCATTTATTCACCCAATGTTGTCGACTTGACTCTCATTGATCTTCCTGGGATGACAAAGGTTGCTGTAGAGGGACAACCAGACAGTATTGTTGAAGACATTGACAACATGGTTCGTTCTTATGTTGAGAAGCCTAACTGCATTATATTGGCGATTTCTCCTGCTAATCAAGACATTGCCACTTCGGATGCTATAAAGCTTGCTAGAGAAGTTGATCCTACAGGTGAAAGAACATTTGGAGTGCTAACAAAACTTGATCTGATGGACAAGGGAACCAATGCTCTGGATGTTCTGGAAGGGAGATCATATAGGCTGCAGCATCCCTGGGTGGGAATTGTAAATCGTTCACAAGCTGATATCAACAAGAATGTTGACATGATTGCTGCCCGTCAAAAAGAGCGTGAATATTTTGAAAGCAGCCCTGAGTATGGACACTTGGCACATAAAATGGGCTCAGAGTATCTTGCAAAACTTCTATCCCAGCATTTGGAGTCTGTCATTCGGCAACGAATTCCAAGTATTATTGCTTTGATTAATAAGACAATTGATGAGCTTAATGCAGAGTTGGATCGTATTGGCAGGCCTATTGCAGTAGATTCAGGGGCCCAGTTGTATACAATTTTGGAAATGTGTCGTGCATTTGACCGTGTCTTTAAGGAACATCTAGATGGAGGGCGAGCTGGTGGAGATAAGATATATGGAGTTTTTGATCATCAATTGCCTGCTGCTTTAAAAAAGCTCCCCTTTGATCGTCATCTTTCTTTACAAAATGTCCGAAAAGTTGTTTCAGAGGCAGATGGTTACCAACCACATTTAATTGCTCCAGAACAAGGATACAGACGACTTATTGATGGATCCCTCAGCTTTTTCAAAGGCCCGGCTGAAGCCTCTGTTGATGCTGTGCATTTCGTTTTGAAAGAACTTGTGCGGAAATCAATAGCTGAAACACAGGAATTGAAGCGATTTCCATCGCTTACAGCTGACATAGCAGCTGCTGCAACAGAAGCATTGGAAAGATTCAGGGAAGAAAGCCGCAAAACAGTGTTACGGCTGGTAGAAATGGAGTCTAGTTACCTCACAGTAGATTTTTTTCGAAAGCAGCAGTTTGAAACAGAAAAACAAGAGAAGAATGCAAACCCATCAGGCCCAAATATGGATCGCTACACAGAAATCCATCTCAGGAGGATAGGATCAAATGTATCAGGGTATATCAGTATGATTTGTGAAACAATGAAGAATTCCATCCCCAAGGCTGTTGTTTATTGTCAAGTCCGAGAGGCCAAAAGATCTCTGCTCAGCCACTTCTATGCTCAGCTTGGGAGAAGAGAGAAGGAGCAGCTTGGTTCAATGTTGGATGAGGACCCGGCACTCATGGAGAAGAGACAGGCCATAGCTAAGAGGCTGGAGCTGTACAAGTCGGCAAGAGATGAGATCGACTCAGTGTCATGGAAATGA 1842 44.57 MATMESLIGLVNRIQRACTVLGDHGGEGMSLWEALPSVAVVGGQSSGKSSVLESVVGRDFLPRGSGIVTRRPLVLQLHKTEQGQAEYGEFLHAPKKKFTDFASVRKEIQDETDRITGKTKHISNIPIHLSIYSPNVVDLTLIDLPGMTKVAVEGQPDSIVEDIDNMVRSYVEKPNCIILAISPANQDIATSDAIKLAREVDPTGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIAARQKEREYFESSPEYGHLAHKMGSEYLAKLLSQHLESVIRQRIPSIIALINKTIDELNAELDRIGRPIAVDSGAQLYTILEMCRAFDRVFKEHLDGGRAGGDKIYGVFDHQLPAALKKLPFDRHLSLQNVRKVVSEADGYQPHLIAPEQGYRRLIDGSLSFFKGPAEASVDAVHFVLKELVRKSIAETQELKRFPSLTADIAAAATEALERFREESRKTVLRLVEMESSYLTVDFFRKQQFETEKQEKNANPSGPNMDRYTEIHLRRIGSNVSGYISMICETMKNSIPKAVVYCQVREAKRSLLSHFYAQLGRREKEQLGSMLDEDPALMEKRQAIAKRLELYKSARDEIDSVSWK* 614
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5571716 5579866 + Vvi1g501 Vvi1g501 769701

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g501 613 PRINTS Dynamin signature 35 53 IPR022812 -
Vvi1g501 613 PRINTS Dynamin signature 60 77 IPR022812 -
Vvi1g501 613 PRINTS Dynamin signature 133 150 IPR022812 -
Vvi1g501 613 PRINTS Dynamin signature 183 201 IPR022812 -
Vvi1g501 613 PRINTS Dynamin signature 202 218 IPR022812 -
Vvi1g501 613 PRINTS Dynamin signature 225 244 IPR022812 -
Vvi1g501 613 PANTHER BNAA09G45430D PROTEIN 4 613 - -
Vvi1g501 613 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 309 IPR027417 -
Vvi1g501 613 Pfam Dynamin family 38 213 IPR045063 -
Vvi1g501 613 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 32 301 IPR030381 GO:0005525
Vvi1g501 613 Pfam Dynamin central region 222 490 IPR000375 -
Vvi1g501 613 Gene3D Dynamin, middle domain 334 590 - -
Vvi1g501 613 Pfam Dynamin GTPase effector domain 518 610 IPR003130 GO:0003924|GO:0005525
Vvi1g501 613 SMART dynamin_3 4 252 IPR001401 GO:0003924|GO:0005525
Vvi1g501 613 SMART GED_2 517 610 IPR003130 GO:0003924|GO:0005525
Vvi1g501 613 PANTHER DYNAMIN 4 613 IPR022812 -
Vvi1g501 613 CDD DLP_1 35 301 IPR001401 GO:0003924|GO:0005525
Vvi1g501 613 Gene3D - 4 310 IPR027417 -
Vvi1g501 613 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 61 70 IPR019762 -
Vvi1g501 613 ProSiteProfiles GED domain profile. 522 613 IPR020850 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g501 - - - vvi:100261017 1184.47
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g501 . Blo16g00754 . Bda11g00186 Bpe13g01007 . . . . . . . . . . . Cpe01g01825 . . . . . . . . . . . . . . . . Cone6ag0359 Cone9ag0389 . . . . . . . Bda11g00186 . . . Bma06g01131 . . . . . . . . . Bhi12g00950 . . . Hepe02g2616 . . Cla01g00644 Cam01g0671 Cec01g0663 Cco01g0689 Clacu01g0660 Cmu01g0633 Cre09g1872 Lsi09g00692 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000261 5 7 3 6 5 5 6 5 5 5 4 4 4 6 5 6 4 8 5 5 5 5 5 5 5 4 4 8 5 5 154