Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g502 ATGGCAGATGGAGGCGGAGGGAAAGAAGATGAAGAGGGTCTGTGTTCATGGAAGAGGTTAAAATGCGCCAGGGATGAAGAATTCGGGGAGGAAGTGCAACCTCTTGGCAGCTTCTTCTACCCAACGGTACCCTCCGCTTTTGTCGTCTCCGACGTTCTCGAGACCGATTTTCCCATCATTTACGTTAATTCCGTCTTCGAAACCAGCACCGGATACCGCGCCGACGAAGTCCTCGGTCGAAACTGTCGATTCTTACAATATAGGGACCCTCGCGCTCAAAGAAGACACCCTTTGGTGGATCCAGTTGTTGTTTCTGAGATCAGAAGATGCCTGGAGGAAGGTATTGAGTTCCAAGGTGAGCTCTTAAATTTCAGGAAGGATGGTACTCCCCTGGTAAACCAGCTAAGACTTGCGCCTATACATGATGATGATGGAGTTGTGACACACATAATAGGTATTCAAGTGTTTTCCGAAGCAAAAATAGATCTGAACCATGTATCATATCCAGTTTTCAAAGAGACTGGCTATCCACATGTTGATCAGTCAGGTAACTATTCTCCTAATGAGCATGTAAGGAAGATGGTATGTCAAAATTCATGGGGAAGAGAAGTCACAGGTACACTGGAACTGATGACTAAGAAATTAGGGTGGGGTCGTCTGGCCAGGGAACTGACCACTCTGGAGGCTGTTTGTTGGAAGAAAATGACCGTTGGAGGTGCAGTGGAGCCTTCTCGTTGCAATTTCAGTGCATGTGCAGCAGGTAATCGACTTGTATTATTTGGAGGTGAGGGAGTTAACATGCAGCCAATGGATGACACATTTGTTCTCAATCTTGATGCTGCAAATCCAGAGTGGCGTCAAGTGAGTGTGAAATCATCCCCACCAGGGCGCTGGGGCCACACTCTTTCATGCCTGAATGGTTCCTGGTTGGTGGTGTTTGGGGGATGTGGGAGGCAAGGATTGCTTAATGATGTCTTTGTTCTTGACTTGGATGCCAAGCATCCAACATGGAAAGAAGTCTTTGGTGGAACTCCCCCTCTCCCTAGATCTTGGCATAGCTCTTGCACAATAGAAGGCTCCAAATTGGTTGTCTCAGGTGGATGCACGGATGCAGGGGTGCTTCTGAGTGACACCTATTTATTGGATCTCACTACAGATAAGCCCATGTGGAGAGAGATTCCAACTTCATGGGCTCCTCCCTCTAGATTGGGACATTCGCTCTCAGTTTATGGAAGGACTAAAATTCTTATGTTTGGTGGGCTTGCTAAGAGTGGGCACTTGAGGTTGCGATCAGCTGGGTTGCACTCTCCTTCCCAGCTCTTCCTTTTAGATCCTTCAGAAGAGAAGCCCTCGTGGAGAATTCTCAATGTTCCAGGGCAACCACCTAAATTTGCTTGGGGTCACAGCACCTGTGTGGTTGGAGGGACCAGGGTCCTTGTCCTGGGTGGGCACACTGGGGAGGAGTGGATACTTAACGAATTGCACGAATTGTGCTTAGCAAGCAGGCAGGACTCGGACCAATGA 1524 48.36 MADGGGGKEDEEGLCSWKRLKCARDEEFGEEVQPLGSFFYPTVPSAFVVSDVLETDFPIIYVNSVFETSTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNQLRLAPIHDDDGVVTHIIGIQVFSEAKIDLNHVSYPVFKETGYPHVDQSGNYSPNEHVRKMVCQNSWGREVTGTLELMTKKLGWGRLARELTTLEAVCWKKMTVGGAVEPSRCNFSACAAGNRLVLFGGEGVNMQPMDDTFVLNLDAANPEWRQVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRQGLLNDVFVLDLDAKHPTWKEVFGGTPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTTDKPMWREIPTSWAPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWILNELHELCLASRQDSDQ* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5581262 5585379 - Vvi1g502 Vvi1g502 769702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g502 507 Gene3D - 221 505 IPR015915 GO:0005515
Vvi1g502 507 ProSiteProfiles PAS repeat profile. 52 114 IPR000014 -
Vvi1g502 507 SMART pac_2 118 159 IPR001610 -
Vvi1g502 507 Pfam Galactose oxidase, central domain 245 295 - -
Vvi1g502 507 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 187 431 - -
Vvi1g502 507 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 14 185 - -
Vvi1g502 507 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 432 505 - -
Vvi1g502 507 SUPERFAMILY PYP-like sensor domain (PAS domain) 51 154 IPR035965 -
Vvi1g502 507 Gene3D PAS domain 40 165 - -
Vvi1g502 507 Pfam Galactose oxidase, central domain 310 357 - -
Vvi1g502 507 Pfam Galactose oxidase, central domain 359 410 - -
Vvi1g502 507 SUPERFAMILY Kelch motif 232 500 IPR015915 GO:0005515
Vvi1g502 507 TIGRFAM sensory_box: PAS domain S-box protein 55 153 IPR000014 -
Vvi1g502 507 Pfam PAS domain 53 154 IPR000014 -
Vvi1g502 507 PANTHER ADAGIO PROTEIN 3 187 431 - -
Vvi1g502 507 PANTHER ADAGIO PROTEIN 3 432 505 - -
Vvi1g502 507 PANTHER ADAGIO PROTEIN 3 14 185 - -
Vvi1g502 507 CDD PAS 44 153 IPR000014 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g502 K12116 FKF1; flavin-binding kelch repeat F-box protein 1 - vvi:100255972 880.937
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g502 . Blo16g00757 . Bda11g00188 Bpe13g01006 . . . Cmo04g01103 . Cma04g01032 Cma04g00079 Car04g00963 Car04g00078 Sed04g2999 . . Bhi07g00405 Tan04g1496 Cmetu10g0634 Lac13g1318 Hepe01g0598 . . Cla07g00531 Cam07g0573 Cec07g0622 Cco07g0597 Clacu07g0576 Cmu07g0611 Cre07g0943 . . Cone6ag0358 Cone9ag0388 Lsi04g01097 . . . . . . Bda11g00188 . . . Bma06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008842 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 34