Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g504 ATGGCGGCTTTGCTGAAAGTGCCGCCGCAGTCGTCCGGGGGCACCAACGGGTCGTGCAAGGCCGACGTGGTGGTGTCCGATCAGTTTCCGGCGGGTCTTAGGGTTCTTGTTGTCGATGATGACGTCACTTGTTTGAAGATCCTGGAGCAGATGCTTCGACGGTGCTTGTATCATGTTACAACTTGCTCCCAGGCCACTATTGCTTTAAATATACTTCGGGAGAAGAAAGGTTGTTTTGATATTGTGCTGAGTGATGTTCATATGCCTGATATGGATGGCTATAAACTTCTTGAACATGTTGGGCTGGAAATGGACCTCCCTGTTATTATGATGTCTGCTGATGGAAGAACAAGCGCTGTGATGAGAGGAATTCGACATGGGGCTTGTGATTATTTGATTAAGCCTATTCGTGAGGAAGAGCTCAAGAATATATGGCAACATGTTGTTCGGAAAAAGTGGAACGAAAATAAAGAACATGAACATTCAGGTAGCTTAGAAGATAATGATCGGCATAAGCGAGGAGGTGAAGATGCTGAATATGCTTCTTCTGTTAATGAAGGAGCAGAAGGAATATTGAAGGGTCAGAAAAAGAGGAGGGATTCTAAGGATGAAGATGATGGCGAATTGGAAAATGAAGATCCATCTACATCAAAGAAACCACGTGTGGTGTGGTCAGTGGAACTCCATCAACAATTTGTCAGTGCTGTAAACCAACTAGGAATTGATAAGGCTGTACCAAAGAGAATTCTTGAATTAATGAATGTTCCGGGGTTAACTAGAGAAAATGTAGCAAGCCATTTGCAGAAATTCAGACTATATTTAAAGAGATTAAGTGGAGTAGCACAACAGCAAGGCGGAATTCCTAATTCTTTCTGTGGTCCAGTAGAACCAAATGTGAAACTGGGTTCGCTTGGAAGGTTTGATATTCAAGCTTTGGCTGCCTCAGGCCAAATTCCTCCACAAACATTGGCAGCCCTGCAAGCTGAGCTTTTAGGTCGACCAACAAGCAACCTAGTGTTGCCAGCGATGGACCAACCAGCTCTTCTACAAGCCTCTCTACAGGGACCCAAGTGTATCCCTGTTGAACATGGTGTGGCATTTGGTCAACCTTTGGTAAAATGCCAGACGAACATTTCCAAGCATTTTCCACCCACCGTTGTATCTACTGAGGATGTTCCTTCAGGGTTTGGAGCATGGCCATCTAATAGCCTTGGTACGGTGGGAACTAGTGGCTCTCTTGGAGGATTGAGTGCTCAGAATAATAACATTCTGATGGATATGAAATAG 1287 44.6 MAALLKVPPQSSGGTNGSCKADVVVSDQFPAGLRVLVVDDDVTCLKILEQMLRRCLYHVTTCSQATIALNILREKKGCFDIVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSADGRTSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKKWNENKEHEHSGSLEDNDRHKRGGEDAEYASSVNEGAEGILKGQKKRRDSKDEDDGELENEDPSTSKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRLSGVAQQQGGIPNSFCGPVEPNVKLGSLGRFDIQALAASGQIPPQTLAALQAELLGRPTSNLVLPAMDQPALLQASLQGPKCIPVEHGVAFGQPLVKCQTNISKHFPPTVVSTEDVPSGFGAWPSNSLGTVGTSGSLGGLSAQNNNILMDMK* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5599547 5605308 + Vvi1g504 Vvi1g504 769704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g504 428 MobiDBLite consensus disorder prediction 156 221 - -
Vvi1g504 428 Pfam Myb-like DNA-binding domain 221 269 IPR001005 -
Vvi1g504 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 407 IPR045279 GO:0009736
Vvi1g504 428 CDD REC_typeB_ARR-like 35 149 - -
Vvi1g504 428 Gene3D - 33 172 - -
Vvi1g504 428 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Vvi1g504 428 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 216 275 IPR017930 -
Vvi1g504 428 PIRSF RR_ARR_type-B 10 427 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vvi1g504 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR 27 407 - -
Vvi1g504 428 SMART REC_2 33 145 IPR001789 GO:0000160
Vvi1g504 428 MobiDBLite consensus disorder prediction 191 205 - -
Vvi1g504 428 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vvi1g504 428 SUPERFAMILY Homeodomain-like 216 276 IPR009057 -
Vvi1g504 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 219 272 IPR006447 GO:0003677
Vvi1g504 428 SUPERFAMILY CheY-like 32 161 IPR011006 -
Vvi1g504 428 Gene3D - 215 278 - -
Vvi1g504 428 MobiDBLite consensus disorder prediction 156 179 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14514 PF00072 Response_reg 4.80E-23 CL0304 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g504 - K14491 vvi:100250832 845.114