Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g516 ATGGTGTCGAGATCGTATTCGAATCTCTTGGAGCTTGCCTCTGGCGAGTCTCCCTCGTTTGGACGCATGAGCCGGCGAATTCCGCGTATTATGACGCGTGACCGATTAATCATAGTAGCTAATCAGCTGCCTATTAGGGCACAGAGGAAATCTGAGAACAATAATGGTTGGATATTTAGTTGGGATGAGAATTCGCTTCTCCTCCAGTTGAAAGACGGGTTAGGGGATGATGAAATTGAAGTTATATATGTAGGTTGCCTTAAGGAAGAAATTCACCCATGTGAACAAGATGAAGTTTCACAGATACTTCTTGAAACCTTCAAATGTGTCCCGACCTTTTTGCCTCCTGATCTGTTTACCAGATACTATCATGGGTTTTGTAAACAACAGTTATGGCCTTTGTTTCATTACATGTTACCCTTATCGCCGGACTTGGGTGGTAGGTTCAACCGTTCTCTATGGCAGGCCTATGTTTCCGTCAATAAGATTTTTGCTGATAGAATCATGGAAGTGATCAACCCAGAAGATGATTTTGTCTGGATCCATGATTATCATCTTATGGTGTTACCCACCTTCTTGAGGAAGAGATTCAATAGGGTGAAACTTGGGTTTTTCCTCCACAGCCCGTTCCCTTCCTCGGAGATTTATAGGACATTGCCAATTAGGGAAGAGCTTTTGCGAGCACTCCGGATGCTGGGTCTTTCTTATGAATCGAAGCGTGGCTATATAGGCCTTGAGTATTACGGTCGAACTGTCAGCATCAAAATTCTTCCCGTTGGTATACACATGGGTCAGCTTCAGTCAGTGTTGAGCCTTCCAGAGACTGAGGAAAAGGTTGCAGAGCTTATTAAGCAGTTTTGTGATCAGGATAGGATAATGTTGCTTGGGGTGGATGATATGGACATATTTAAGGGCATAAGTTTGAAGCTATTGGCAATGGAACAGCTGCTTGTGCAGCACCCGGAGTGGCAGGGGAAGGTTGTGTTGGTGCAGATAGCCAATCCAGCAAGGGGCCGAGGGAAAGACGTGAAAGAAGTTCAGACCGAGACTTTCTCGACTGTGAAGCGGATTAATGAGACATTTGGGAAACCAGGGTATGATCCTGTTGTCTTGATTGATGAACCACTCAAGTTTTATGAGAGAATTGCTTATTATGTGGTCGCTGAGTGTTGCTTGAAGAGCATGTTAGTTGTCTCGGAGTTTATTGGCTGCTCCCCATCGTTGAGTGGAGCAATTCGAGTGAACCCATGGAATATTGATGCAGTGGCAGATGCAATGGACTCCGCCCTGGAGATGCTGGAGCCAGAAAAACAGCTACGACATGAGAAGCATTATAGGTATGTCAGTACCCATGATGTTGGTTATTGGGCTCGTAGTTTTCTACAAGATTTGGAGAGAACTTGTAGGGATCATGTGCGAAGGAGGAAGCTCTCAATGGAGCATATAGTGTCAGCATACAAAAGGACTACAACTAGGGCAATCCTTCTAGATTATGATGGTACTTTGATGCCTCAAGCTTCTATTGATAAGGGCCCAACTCCTAAGTCCATTGAAATGCTTAAAACACTCTGCAGGGATGAGAACAATATGGTTTTAATCGTCAGTGCTAGAAGCCGGAAGAAACTTGAAGACTGGTTTTCTCCTTGTGAGAATCTGGGAATTGCTGCAGAGCATGGTTATTTTCTAAGGCCCAAGGGGGATGTGGAATGGGAAACATGTGTACCAGTGGCAGACTGTAGCTGGAAGCAAATTGCAGAGCCAGTGATGAAGCTTTACACGGAAACAACTGATGGGTCCACTATTGAAGATAAGGAAACCGCACTGGCTTGGTGTTATGAGGATGCGGATCCTGATTTTGGCTCTTGCCAAGCTAAGGAGCTTCTTGATCATCTCGAGAGTGTACTCGCGAACGAACCAGTTACTGTCAAGAGTGGACAGAGTCTTGTAGAAGTTAAGCCACAGGGCGTGAGCAAGGGAATTGTAGCTAAACGCCTGCTTTCCACCATGCAAGAGAGGGGAATGTTACCTGACTTTGTTCTGTGCATAGGAGACGACCGATCTGATGAAGACATGTTTGAGGCGATCACCAAGCAACCGGTTCCTCTATAG 2109 45.28 MVSRSYSNLLELASGESPSFGRMSRRIPRIMTRDRLIIVANQLPIRAQRKSENNNGWIFSWDENSLLLQLKDGLGDDEIEVIYVGCLKEEIHPCEQDEVSQILLETFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEEKVAELIKQFCDQDRIMLLGVDDMDIFKGISLKLLAMEQLLVQHPEWQGKVVLVQIANPARGRGKDVKEVQTETFSTVKRINETFGKPGYDPVVLIDEPLKFYERIAYYVVAECCLKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMLEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHVRRRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKGPTPKSIEMLKTLCRDENNMVLIVSARSRKKLEDWFSPCENLGIAAEHGYFLRPKGDVEWETCVPVADCSWKQIAEPVMKLYTETTDGSTIEDKETALAWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSLVEVKPQGVSKGIVAKRLLSTMQERGMLPDFVLCIGDDRSDEDMFEAITKQPVPL* 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5722390 5726992 - Vvi1g516 Vvi1g516 769716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g516 702 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 34 468 - -
Vvi1g516 702 Pfam Glycosyltransferase family 20 230 392 IPR001830 GO:0003824|GO:0005992
Vvi1g516 702 Pfam Glycosyltransferase family 20 393 465 IPR001830 GO:0003824|GO:0005992
Vvi1g516 702 Pfam Glycosyltransferase family 20 35 229 IPR001830 GO:0003824|GO:0005992
Vvi1g516 702 TIGRFAM T6PP: trehalose-phosphatase 491 698 IPR003337 GO:0003824|GO:0005992
Vvi1g516 702 CDD GT20_TPS 35 465 IPR001830 GO:0003824|GO:0005992
Vvi1g516 702 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 392 - -
Vvi1g516 702 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 393 697 - -
Vvi1g516 702 Pfam Trehalose-phosphatase 495 698 IPR003337 GO:0003824|GO:0005992
Vvi1g516 702 SUPERFAMILY HAD-like 492 695 IPR036412 -
Vvi1g516 702 CDD HAD_TPP 493 695 - -
Vvi1g516 702 Gene3D - 574 654 - -
Vvi1g516 702 Gene3D Glycogen Phosphorylase B; 23 234 - -
Vvi1g516 702 Gene3D - 494 696 IPR023214 -
Vvi1g516 702 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 494 694 IPR006379 -
Vvi1g516 702 Gene3D Glycogen Phosphorylase B; 264 394 - -
Vvi1g516 702 Gene3D Glycogen Phosphorylase B; 395 449 - -
Vvi1g516 702 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 392 IPR001830 GO:0003824|GO:0005992
Vvi1g516 702 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 393 697 IPR001830 GO:0003824|GO:0005992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g516 K16055 - vvi:100252552 1352.42