Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g52 ATGATCAAAGCTTTCGTACTCAAGGGCAAACTGATCAACACCATTCAGATTTACTCCCAGATGCTGGAAAATGGGCTGTACCCTGACAACTACACCCTTCCTTATGTGTTGAAGGCCTGTGCAGGGCTGCAGAGCTGTCATCTAGGAGAATCGGCTCATGGGCAGAGTGTGAAGCTGGGGTTTTGGTTTGATATTTTTGTGGGTAACACTTTGATTGCCATGTACTCATCATTTGGAAATGTGAGGGCAGCAAGATGCATATTTGATGAAATGCCTTGGCACACTGCTGTGTCATGGACAGTCATGATTTCTGGGTATGCAAAGAACAATTGTTTTAAGGAGGGTTTGCAGATGTTCCGTTTGATGCAGTCCACAGGGTTGGAGCCTGATGAGGCCATTCTTGTGAGCATTCTATGTGCTTGTGCCCATTTAGGAGCTATGGAAATTGGGGTTTGGGTCCATAGATATTTGGACCAATTGGGTCATCCACTGAGTGTGAGATTGAGCACTGGTCTGATAGACATGTATGCTAAATGTGGGAGTTTGGATATAGCCAAGAAACTGTTTGACGGAATGTCGCAAAGGGATACAATTTGTTGGAATGCCATGATTTCAGGGATGGCAATGAATGGAGATGGAGACAATGCACTTAGGCTGTTTTCAGAGATGGAGAAGGCTGGTGTCAAGCCTGATGATATCACCTTCATTGCCATTTTTACTGCTTCAGCCCCACGGAGCAAGCCATAG 747 45.38 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTASAPRSKP* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 572046 573055 + Vvi1g52 Vvi1g52 769252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g52 248 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 108 - -
Vvi1g52 248 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 102 242 - -
Vvi1g52 248 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vvi1g52 248 TIGRFAM PPR: pentatricopeptide repeat domain 198 231 IPR002885 -
Vvi1g52 248 TIGRFAM PPR: pentatricopeptide repeat domain 97 131 IPR002885 -
Vvi1g52 248 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Vvi1g52 248 Gene3D Tetratricopeptide repeat domain 50 152 IPR011990 GO:0005515
Vvi1g52 248 Gene3D Tetratricopeptide repeat domain 153 247 IPR011990 GO:0005515
Vvi1g52 248 Pfam PPR repeat 69 92 IPR002885 -
Vvi1g52 248 Pfam PPR repeat 97 126 IPR002885 -
Vvi1g52 248 Pfam PPR repeat 171 195 IPR002885 -
Vvi1g52 248 Pfam PPR repeat 1 26 IPR002885 -
Vvi1g52 248 Pfam PPR repeat family 196 241 IPR002885 -
Vvi1g52 248 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 108 - -
Vvi1g52 248 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 102 242 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g52 - - - vvi:100244013 442.965
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01731 Chy09g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014116 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 2 0 1 1 1 1 0 0 1 0 1 1 1 23