Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g52 ATGATCAAAGCTTTCGTACTCAAGGGCAAACTGATCAACACCATTCAGATTTACTCCCAGATGCTGGAAAATGGGCTGTACCCTGACAACTACACCCTTCCTTATGTGTTGAAGGCCTGTGCAGGGCTGCAGAGCTGTCATCTAGGAGAATCGGCTCATGGGCAGAGTGTGAAGCTGGGGTTTTGGTTTGATATTTTTGTGGGTAACACTTTGATTGCCATGTACTCATCATTTGGAAATGTGAGGGCAGCAAGATGCATATTTGATGAAATGCCTTGGCACACTGCTGTGTCATGGACAGTCATGATTTCTGGGTATGCAAAGAACAATTGTTTTAAGGAGGGTTTGCAGATGTTCCGTTTGATGCAGTCCACAGGGTTGGAGCCTGATGAGGCCATTCTTGTGAGCATTCTATGTGCTTGTGCCCATTTAGGAGCTATGGAAATTGGGGTTTGGGTCCATAGATATTTGGACCAATTGGGTCATCCACTGAGTGTGAGATTGAGCACTGGTCTGATAGACATGTATGCTAAATGTGGGAGTTTGGATATAGCCAAGAAACTGTTTGACGGAATGTCGCAAAGGGATACAATTTGTTGGAATGCCATGATTTCAGGGATGGCAATGAATGGAGATGGAGACAATGCACTTAGGCTGTTTTCAGAGATGGAGAAGGCTGGTGTCAAGCCTGATGATATCACCTTCATTGCCATTTTTACTGCTTCAGCCCCACGGAGCAAGCCATAG 747 45.38 MIKAFVLKGKLINTIQIYSQMLENGLYPDNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIFDEMPWHTAVSWTVMISGYAKNNCFKEGLQMFRLMQSTGLEPDEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTASAPRSKP* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 572046 573055 + Vvi1g52 Vvi1g52 769252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g52 248 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 108 - -
Vvi1g52 248 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 102 242 - -
Vvi1g52 248 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
Vvi1g52 248 TIGRFAM PPR: pentatricopeptide repeat domain 198 231 IPR002885 -
Vvi1g52 248 TIGRFAM PPR: pentatricopeptide repeat domain 97 131 IPR002885 -
Vvi1g52 248 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Vvi1g52 248 Gene3D Tetratricopeptide repeat domain 50 152 IPR011990 GO:0005515
Vvi1g52 248 Gene3D Tetratricopeptide repeat domain 153 247 IPR011990 GO:0005515
Vvi1g52 248 Pfam PPR repeat 69 92 IPR002885 -
Vvi1g52 248 Pfam PPR repeat 97 126 IPR002885 -
Vvi1g52 248 Pfam PPR repeat 171 195 IPR002885 -
Vvi1g52 248 Pfam PPR repeat 1 26 IPR002885 -
Vvi1g52 248 Pfam PPR repeat family 196 241 IPR002885 -
Vvi1g52 248 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 108 - -
Vvi1g52 248 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 102 242 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g52 - - vvi:100244013 442.965