Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g522 ATGGAAGAAGATAGTGCCAAGAATGAGGAAGAGGACTTTAACACAGGGCCACTTTCTGTTTTAATGATGAGTGTTAAAAATAACACTCAGGTGCTTATCAATTGTCGAAACAACAAGAAGCTTCTTGGCCGGGTGAGAGCCTTCGATAGGCACTGCAACATGGTTCTTGAAAATGTCAGGGAGATGTGGACAGAGGTACCAAAAACTGGGAAAGGCAAGAAAAAGGCCAATCCAGTTAACAAGGATAGATTCATTAGCAAGATGTTCCTCCGTGGAGATTCTGTGATCATTGTTCTTAGAAATCCCAAGTGA 312 41.99 MEEDSAKNEEEDFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKANPVNKDRFISKMFLRGDSVIIVLRNPK* 104
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5781885 5784954 - Vvi1g522 Vvi1g522 769722

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g522 103 SUPERFAMILY Sm-like ribonucleoproteins 16 101 IPR010920 -
Vvi1g522 103 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 1 103 IPR027248 GO:0008380|GO:0030532
Vvi1g522 103 PANTHER SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 1 103 - -
Vvi1g522 103 Gene3D - 11 103 - -
Vvi1g522 103 SMART Sm3 21 100 IPR001163 -
Vvi1g522 103 CDD Sm_D2 13 102 IPR027248 GO:0008380|GO:0030532
Vvi1g522 103 Pfam LSM domain 24 98 IPR001163 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g522 K11096 SNRPD2, SMD2; small nuclear ribonucleoprotein D2 - vvi:100242311 211.075
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g522 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004188 3 1 2 2 1 1 2 1 1 0 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 2 4 3 2 43