Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g524 ATGAGGCCCAAACGCAATCGAAAGAAGCGAAACTTCGAATCACTTCCATACAACAAGAAACTCCGGTCGAAGCTACCTCGCCGGAGACGATCTCAGATCTCTCCAATTTTGTACACGACTTCGAACTCGAATGCTGTCCGTACGAAATCTGGTTTACATGCTTTTCCATTGCGTTCAAGTTCTTCATCTTACAATTCGAGTAGAATTTCAAGTTTTCTGAGGAAGAGAGAGTTTGAGGAGATAGGAGCTTCTGGAGCAGTAACTCGAGGAAACGAGAAGGTCCGGAGAATTACTAGATCTTATTACCGACAGAAGCAGAATGAGAGAAAGTTGGAGATTGGAGACGGTGGTGTAGAAGCGTCTGAATCGTCCTGTGTGGAGTCCTGTTCTGGAGCAGATGTTCGATCCGATGCCAGAAACATCAAGAAATCTTCGGAAAGGAAAGACAACGACGTAACTACTTCAGTTACCTCTGGCGTGGAATTGTCTTCGGAAATGAAGTTTCAGAATGCGAGTTCACCTCTTGGAAACAGAGCTTTAGAATCTGAGATCTCGCGAAGTTCACGAAATTACGTCGATGCGAACTTCACTATTTCGAATTCTGGTTCAAATTCGGAACAGATGCCAAAGGGCTTAGTTTTTGACTGTGATCTTTGCTGCTCGGAGTATCTGTCATACGATGAGGTTTCAGATTATTCGTCCAGTCACGAGATGCTAATTTCCGAGATGCAAACGGATGTTCTCCCGGAAAATCCCGAACTAGATTTCTCCGATTACACTCCGTCTCTCTTCTTCGAGTCTGGAAGCGAATTCTCTGAGAGATCAGAGGGAGATTCGACTCGGTCACCCACTTTCTCGTTGTTTGTTCAGTATAATCAGCAATTTTCCAGATTAGCTTCTCGTCTTGATGCACGAGTTTCTTCATCACTCTTGTTGAGGTTCGAAGACGAGGACGACGAAGAGAGCTACCAGAGGTTCAGAAGCAGAGAGAGAAAAGCGTGCCTACATGACTATGGCAAAGAATACTGCTCCAAGACGGAGTACGGCGGTCTCGTCGCCGAGCAGCGGTTATTGATGGTACACTGGATACTTGAGCAATCTGCCGCAAAGGAACTCCAGAAAGAGACCCTGTTTCTAGGAGTAAACCTCCTTGACCGATTCCTCAGTAAAGGATTCTTCAAGAACAAAAGGAGCCTTCAAATTGTCGGAATAGCATGTCTTACACTAGCCACGAGGATAGAAGAAAACCAGCCTTACAACAGCCTGCGGCAGAAGACATTTTGCATAGGAAACAATGTGTTTAACAGGCGTGAAGTGATAGCAATGGAATGGCTGGTGCAGGAAGTTCTCAATTTCCAGTGCTTCATGCCCACCACCTACAACTTTTTATGGTTCTACCTGAAAGCTGCAAGGGCGAGTGCGGAGGTGGAGAGGATGGCCAAGTACCTGGCAGTGCTAGCGCTGCTGGACCATGAGCAGCTGTGCTACTGGCGCTCAACTGTTGCGGCAGGGTTGGTCATCCTTGCTTCTCTAGCAGCCAATCAAGATGCATCCTGCCAACGGGTCATGGAGACCCACGTAAGAACGAAAGATGATGATCTACCTGAGTGCATAAAGAGTATGGAGTGGTTGGTAAAGTACGTGTCCTAG 1650 46.67 MRPKRNRKKRNFESLPYNKKLRSKLPRRRRSQISPILYTTSNSNAVRTKSGLHAFPLRSSSSSYNSSRISSFLRKREFEEIGASGAVTRGNEKVRRITRSYYRQKQNERKLEIGDGGVEASESSCVESCSGADVRSDARNIKKSSERKDNDVTTSVTSGVELSSEMKFQNASSPLGNRALESEISRSSRNYVDANFTISNSGSNSEQMPKGLVFDCDLCCSEYLSYDEVSDYSSSHEMLISEMQTDVLPENPELDFSDYTPSLFFESGSEFSERSEGDSTRSPTFSLFVQYNQQFSRLASRLDARVSSSLLLRFEDEDDEESYQRFRSRERKACLHDYGKEYCSKTEYGGLVAEQRLLMVHWILEQSAAKELQKETLFLGVNLLDRFLSKGFFKNKRSLQIVGIACLTLATRIEENQPYNSLRQKTFCIGNNVFNRREVIAMEWLVQEVLNFQCFMPTTYNFLWFYLKAARASAEVERMAKYLAVLALLDHEQLCYWRSTVAAGLVILASLAANQDASCQRVMETHVRTKDDDLPECIKSMEWLVKYVS* 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5806546 5811465 + Vvi1g524 Vvi1g524 769724

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g524 549 Pfam Cyclin, C-terminal domain 457 545 IPR004367 -
Vvi1g524 549 ProSitePatterns Cyclins signature. 356 387 IPR006671 -
Vvi1g524 549 MobiDBLite consensus disorder prediction 1 35 - -
Vvi1g524 549 Gene3D - 451 549 - -
Vvi1g524 549 SMART cyclin_7 361 448 IPR013763 -
Vvi1g524 549 MobiDBLite consensus disorder prediction 136 150 - -
Vvi1g524 549 SUPERFAMILY Cyclin-like 456 545 IPR036915 -
Vvi1g524 549 CDD CYCLIN 457 545 IPR013763 -
Vvi1g524 549 CDD CYCLIN 356 446 IPR013763 -
Vvi1g524 549 Pfam Cyclin, N-terminal domain 351 453 IPR006671 -
Vvi1g524 549 PANTHER CYCLIN-SDS 1 539 - -
Vvi1g524 549 PANTHER CYCLINS 1 539 IPR039361 -
Vvi1g524 549 SUPERFAMILY Cyclin-like 316 453 IPR036915 -
Vvi1g524 549 MobiDBLite consensus disorder prediction 136 158 - -
Vvi1g524 549 Gene3D - 347 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g524 K21777 CCNB; G2/mitotic-specific cyclin-B, other - vvi:100257582 996.882
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g524 . . . . . . Bma14g01920 . . . . Cma04g00085 . Car04g00086 . . . . . . . . . . . . . . . . . . . Cone6ag0348 Cone9ag0381 . . Chy10g00215 . . Blo11g00966 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01127 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008679 0 1 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 35