Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g528 ATGGCTCTCCCCTTCCTCTGCTCTGTGCTCATTTTCACCTTCCTCTTCTGTAACCCTCCACCGTTGTCGGCCCAACCGCAACAGAACATCTCAAACTTCTCCTCCTCAGACTCCCCATGGCGACCAAGCCAAGGCCAGATTCTTCTCTCTCCCAACTCCACCTTCGCTGCCGGGTTCTGGCCGACACCCACTTCTCCAAATCTCTATATCTTCTCAATTTGGTACCTCAATATCTCTGTACACACCGATATTTGGTCCGCCAACGCCAATTCCCCGGTCAGTGGCAACGGTACCGTCTCAATTACTGCCTCCGGTGAGCTCCGGCTTGTTGATTCGTCCGGCAAGAACTTATGGCCGGGGAACGCTACGGGAAACCCAAACTCCACCAAACTGGTCCTCAGGAACGATGGTGTACTGGTTTATGGGGACTGGTCGAGTTTTGGTTCTCCGACCGATACTATTCTTCCAAATCAGCAGATAAATGGTACAAGGCTCGTCTCAAGGAACGGTAAGTATAAATTTAAGAACTCCATGAGACTGGTTTTCAACGATTCTGATAGCTACTGGAGTACGGCTAATGCGTTCCAGAAGTTGGACGAATATGGAAACGTGTGGCAGGAGAATGGAGAGAAGCAAATTTCCTCGGATCTTGGTGCTGCCTGGTTGCGTAGATTGACCCTTGACAATGATGGGAATTTGAGAGTTTACAGTTTTCAAGGAGGTGTGGATGGGTGGGTTGTTGTTTGGCTGGCTGTACCAGAAATATGCACAATTTATGGCAGATGTGGTGCTAACTCTATATGTATGAACGATGGTGGGAATTCTACTCGATGTACTTGTCCTCCCGGTTTTCAGCAAAGGGGAGATTCATGCGACAGGAAAATTCAGATGACGCAAAACACAAAGTTTCTCCGGCTTGACTACGTCAACTTCAGCGGCGGGGCCGACCAAAACAATCTGGGTGTTCAGAATTTTACCATCTGTGAATCCAAATGCTTAGCCAACCGGGATTGTCTAGGTTTTGGATTCAAATATGACGGATCGGGTTATTGCGTACTTCAGCTCAAGCGGCTGTTATATGGATACTGGTCTCCGGGAACCGAGACCGCCATGTATCTGCGGGTGGACAATTCGGAATCTGATCAAAGCAACTTCACTGGCATGACGGATTTGCTTGAAACCACATGCCCAGTCCGGATCAGCCTCCCTCTGCCGCCTGAAGAATCCAATACCACGACGCGGAACATTGTCATTATATGCACTCTCTTCGCGGCGGAGCTCATTTCCGGTGTTCTTTTCTTCTCTGCTTTTCTCAAGAAATACATCAAATACAGAGACATGGCTCGAACCCTCGGCCTAGAATTCCTTCCCGCAGGTGGCCCCAAACGATTCACGTACGCGGAGCTCAAGGCCGCGACAAATGACTTCTCCGACTGTGTCGGAAAAGGCGGGTTCGGCGACGTATACAAAGGGGAACTGCCTGATCACCGCATCGTCGCTGTGAAGTGCCTGAAAAATGTGACGGGCGGGGACCCAGAGTTTTGGGCAGAGGTCACCATCATTGCCCGTATGCATCACCTCAATCTGGTCCGCTTGTGGGGTTTCTGCGCCGAGAAGGGCCGGCGAATACTGGTCTACGAGTACGTCCCAAAGGGTTCTCTGGACAAGTTCCTCTTCCCCGCGCATTGGAATATCCGTTATCGAATCGCACTGGGCGTGGCGAGGGCGATAGCATACCTCCACGAGGAGTGTCTGGAGTGGGTGCTCCATTGCGATATCAAGCCGGAAAACATACTTCTGGGAGACGATTTCTGCCCTAAAATTTCAGATTTTGGGTTGGCGAAACTGAAGAAGAAGGAAGACATGGTGAGCATGTCAAGGATCCGAGGGACCCGCGGGTACATGGCGCCCGAATGGGTGAAGATGGATCCCATTACCCCCAAGGCTGACGTCTACAGCTTCGGAATGGTGCTTCTGGAAATTGTAAGTGGGCGAAGGAATAACGAAATCCAAGATTCCCTCACGCAGAGTGAGGACTGGTATTTCCCAAGGTGGGCTTTCGACAAGGTGTTCAAGGAAATGAGGGTGGAGGACATTCTGGACAGTCAGATCATCCACTGTTACGACAGTCGATTGCACTTTGACATGGTGGATCGCATGGTGAAGACGGCGATGTGGTGTCTTCAGGACCGACCGGAGATGCGGCCTTCCATGGGGAAGGTTGCTAAGATGCTTGAAGGAACGAAAATCCTTCCTCTTCCTCCACACTTAATTATAATATCCTTAACATGCTTTCACACGTGTGTATTAAGGTACTTTTTCCCCTGCTTTCACATACATGTTTTTAGGGTGTTTCTACTTTCTACAAATACAAGGAAATTAATTTTTTTTTCTTGCATTATCTTCCATAATTTTATAATTGTGGCTTTTTCGGAAAGCTTTTTGTACCATAGTAATTTTTAA 2463 49.05 MALPFLCSVLIFTFLFCNPPPLSAQPQQNISNFSSSDSPWRPSQGQILLSPNSTFAAGFWPTPTSPNLYIFSIWYLNISVHTDIWSANANSPVSGNGTVSITASGELRLVDSSGKNLWPGNATGNPNSTKLVLRNDGVLVYGDWSSFGSPTDTILPNQQINGTRLVSRNGKYKFKNSMRLVFNDSDSYWSTANAFQKLDEYGNVWQENGEKQISSDLGAAWLRRLTLDNDGNLRVYSFQGGVDGWVVVWLAVPEICTIYGRCGANSICMNDGGNSTRCTCPPGFQQRGDSCDRKIQMTQNTKFLRLDYVNFSGGADQNNLGVQNFTICESKCLANRDCLGFGFKYDGSGYCVLQLKRLLYGYWSPGTETAMYLRVDNSESDQSNFTGMTDLLETTCPVRISLPLPPEESNTTTRNIVIICTLFAAELISGVLFFSAFLKKYIKYRDMARTLGLEFLPAGGPKRFTYAELKAATNDFSDCVGKGGFGDVYKGELPDHRIVAVKCLKNVTGGDPEFWAEVTIIARMHHLNLVRLWGFCAEKGRRILVYEYVPKGSLDKFLFPAHWNIRYRIALGVARAIAYLHEECLEWVLHCDIKPENILLGDDFCPKISDFGLAKLKKKEDMVSMSRIRGTRGYMAPEWVKMDPITPKADVYSFGMVLLEIVSGRRNNEIQDSLTQSEDWYFPRWAFDKVFKEMRVEDILDSQIIHCYDSRLHFDMVDRMVKTAMWCLQDRPEMRPSMGKVAKMLEGTKILPLPPHLIIISLTCFHTCVLRYFFPCFHIHVFRVFLLSTNTRKLIFFSCIIFHNFIIVAFSESFLYHSNF* 821
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5847647 5850416 - Vvi1g528 Vvi1g528 769728

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g528 820 Pfam Protein kinase domain 479 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g528 820 PANTHER OS07G0415500 PROTEIN 562 750 - -
Vvi1g528 820 PANTHER OS07G0415500 PROTEIN 8 561 - -
Vvi1g528 820 ProSitePatterns Protein kinases ATP-binding region signature. 480 502 IPR017441 GO:0005524
Vvi1g528 820 ProSiteProfiles EGF-like domain profile. 252 292 IPR000742 -
Vvi1g528 820 SUPERFAMILY Protein kinase-like (PK-like) 456 748 IPR011009 -
Vvi1g528 820 CDD B_lectin 43 150 IPR001480 -
Vvi1g528 820 Gene3D Transferase(Phosphotransferase) domain 1 549 751 - -
Vvi1g528 820 PANTHER OS10G0101000 PROTEIN 562 750 - -
Vvi1g528 820 PANTHER OS10G0101000 PROTEIN 8 561 - -
Vvi1g528 820 ProSitePatterns EGF-like domain signature 2. 278 291 IPR000742 -
Vvi1g528 820 Pfam S-locus glycoprotein domain 207 286 IPR000858 GO:0048544
Vvi1g528 820 PIRSF SRK 176 766 IPR024171 GO:0004674
Vvi1g528 820 PIRSF SRK 1 221 IPR024171 GO:0004674
Vvi1g528 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 193 IPR036426 -
Vvi1g528 820 Gene3D - 40 151 IPR036426 -
Vvi1g528 820 Pfam D-mannose binding lectin 82 162 IPR001480 -
Vvi1g528 820 ProSiteProfiles Protein kinase domain profile. 474 759 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g528 820 SMART serkin_6 474 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g528 820 ProSiteProfiles Bulb-type lectin domain profile. 33 154 IPR001480 -
Vvi1g528 820 CDD STKc_IRAK 480 747 - -
Vvi1g528 820 ProSiteProfiles PAN/Apple domain profile. 291 377 IPR003609 -
Vvi1g528 820 Gene3D Phosphorylase Kinase; domain 1 448 548 - -
Vvi1g528 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 588 600 IPR008271 GO:0004672|GO:0006468
Vvi1g528 820 SMART blect_4 43 150 IPR001480 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g528 - - - vvi:100264487 1541.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76509 PF00069 Pkinase 9.00E-46 CL0016 Vvi PK