Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g53 ATGGCTCGTCCGTCTTCTTCAGTGGCTTTGAATCTGATTCTCCTTCTGTCCTTGTTTCTCGACCTCGGCCTCTGCAAAACCCTAAAGCGTGATGTGAAGGCTTTGAACGAAATCAAGGCGTCTCTGGGATGGAGAGTGGTGTACGCGTGGGTCGGAGACGATCCCTGCGGCGACGGCGACCTCCCGCCTTGGTCTGGTGTCACCTGCTCTACTCAGGGTGATTATAGAGTAGTTACTGAACTGGAAGTTTATGCAGTGTCGATTGTGGGGCCTTTTCCTACTGCTGTGACCAATTTGTTGGATCTTACAAGGCTGGATCTCCATAATAACAAGTTGACTGGGCCTATTCCTCCACAAATTGGACGGCTGAAGCGTCTTAGAATACTTAATTTGAGGTGGAATAAGCTACAAGATGTCATTCCTCCTGAAATAGGTGAATTGAAGAGATTAACACATCTATATCTGAGCTTCAATAATTTCAAAGGGGAAATCCCCAAGGAGCTTGCAAATCTTCCTGAGCTTCGTTACCTCTATCTACATGAAAATCGTTTTGTTGGCCGTATTCCTCCAGAATTGGGCACTCTGCAAAACCTTCGGCACTTGGATGTTGGCAACAATCATTTGGTGGGTACCATAAGGGAACTCATACGCATTGAGGGATGCTTTCCTGCTCTTCGCAACCTCTATCTGAATAACAATTATTTCAGTGGAGGAATTCCAGCACAACTTGCAAACTTGACGAACTTAGAAATCTTGTACCTATCCCACAACAAAATGTCTGGTGTAGTACCATCTGGGCTTGCTCATATTCCTAGATTGACTTCCTTGTTCTTGGATCACAATCAATTTTCAGGGAGAATTCCTGATGCCTTCTATAAGCACCCTTTTCTGAAAGAAATGTACATTGAAGGAAATGCATTCCGGCCAGGTGTGAAACCCATAGGTGTACACAAAGTCCTCGAAGTTTCTGACACGGATTTCCTCTTTTAG 990 44.95 MARPSSSVALNLILLLSLFLDLGLCKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPPEIGELKRLTHLYLSFNNFKGEIPKELANLPELRYLYLHENRFVGRIPPELGTLQNLRHLDVGNNHLVGTIRELIRIEGCFPALRNLYLNNNYFSGGIPAQLANLTNLEILYLSHNKMSGVVPSGLAHIPRLTSLFLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVKPIGVHKVLEVSDTDFLF* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 573525 579404 - Vvi1g53 Vvi1g53 769253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g53 329 Pfam Leucine Rich Repeat 197 209 IPR001611 GO:0005515
Vvi1g53 329 SMART LRR_typ_2 246 269 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 270 294 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 171 195 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 99 123 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 147 170 IPR003591 -
Vvi1g53 329 Gene3D Ribonuclease Inhibitor 219 318 IPR032675 -
Vvi1g53 329 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 6 329 - -
Vvi1g53 329 SUPERFAMILY L domain-like 32 308 - -
Vvi1g53 329 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vvi1g53 329 Pfam Leucine rich repeat 223 283 IPR001611 GO:0005515
Vvi1g53 329 Gene3D Ribonuclease Inhibitor 24 218 IPR032675 -
Vvi1g53 329 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 6 329 - -
Vvi1g53 329 PRINTS Leucine-rich repeat signature 102 115 - -
Vvi1g53 329 PRINTS Leucine-rich repeat signature 246 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g53 - - - vvi:100243945 644.81
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g53 . . . . . . . Bma15g00135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01732 Chy09g00673 Cme09g00691
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002810 1 3 0 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 3 1 2 1 2 2 2 2 2 3 5 1 56