Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g53 ATGGCTCGTCCGTCTTCTTCAGTGGCTTTGAATCTGATTCTCCTTCTGTCCTTGTTTCTCGACCTCGGCCTCTGCAAAACCCTAAAGCGTGATGTGAAGGCTTTGAACGAAATCAAGGCGTCTCTGGGATGGAGAGTGGTGTACGCGTGGGTCGGAGACGATCCCTGCGGCGACGGCGACCTCCCGCCTTGGTCTGGTGTCACCTGCTCTACTCAGGGTGATTATAGAGTAGTTACTGAACTGGAAGTTTATGCAGTGTCGATTGTGGGGCCTTTTCCTACTGCTGTGACCAATTTGTTGGATCTTACAAGGCTGGATCTCCATAATAACAAGTTGACTGGGCCTATTCCTCCACAAATTGGACGGCTGAAGCGTCTTAGAATACTTAATTTGAGGTGGAATAAGCTACAAGATGTCATTCCTCCTGAAATAGGTGAATTGAAGAGATTAACACATCTATATCTGAGCTTCAATAATTTCAAAGGGGAAATCCCCAAGGAGCTTGCAAATCTTCCTGAGCTTCGTTACCTCTATCTACATGAAAATCGTTTTGTTGGCCGTATTCCTCCAGAATTGGGCACTCTGCAAAACCTTCGGCACTTGGATGTTGGCAACAATCATTTGGTGGGTACCATAAGGGAACTCATACGCATTGAGGGATGCTTTCCTGCTCTTCGCAACCTCTATCTGAATAACAATTATTTCAGTGGAGGAATTCCAGCACAACTTGCAAACTTGACGAACTTAGAAATCTTGTACCTATCCCACAACAAAATGTCTGGTGTAGTACCATCTGGGCTTGCTCATATTCCTAGATTGACTTCCTTGTTCTTGGATCACAATCAATTTTCAGGGAGAATTCCTGATGCCTTCTATAAGCACCCTTTTCTGAAAGAAATGTACATTGAAGGAAATGCATTCCGGCCAGGTGTGAAACCCATAGGTGTACACAAAGTCCTCGAAGTTTCTGACACGGATTTCCTCTTTTAG 990 44.95 MARPSSSVALNLILLLSLFLDLGLCKTLKRDVKALNEIKASLGWRVVYAWVGDDPCGDGDLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPTAVTNLLDLTRLDLHNNKLTGPIPPQIGRLKRLRILNLRWNKLQDVIPPEIGELKRLTHLYLSFNNFKGEIPKELANLPELRYLYLHENRFVGRIPPELGTLQNLRHLDVGNNHLVGTIRELIRIEGCFPALRNLYLNNNYFSGGIPAQLANLTNLEILYLSHNKMSGVVPSGLAHIPRLTSLFLDHNQFSGRIPDAFYKHPFLKEMYIEGNAFRPGVKPIGVHKVLEVSDTDFLF* 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 573525 579404 - Vvi1g53 Vvi1g53 769253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g53 329 Pfam Leucine Rich Repeat 197 209 IPR001611 GO:0005515
Vvi1g53 329 SMART LRR_typ_2 246 269 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 270 294 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 171 195 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 99 123 IPR003591 -
Vvi1g53 329 SMART LRR_typ_2 147 170 IPR003591 -
Vvi1g53 329 Gene3D Ribonuclease Inhibitor 219 318 IPR032675 -
Vvi1g53 329 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 6 329 - -
Vvi1g53 329 SUPERFAMILY L domain-like 32 308 - -
Vvi1g53 329 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vvi1g53 329 Pfam Leucine rich repeat 223 283 IPR001611 GO:0005515
Vvi1g53 329 Gene3D Ribonuclease Inhibitor 24 218 IPR032675 -
Vvi1g53 329 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 6 329 - -
Vvi1g53 329 PRINTS Leucine-rich repeat signature 102 115 - -
Vvi1g53 329 PRINTS Leucine-rich repeat signature 246 259 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g53 - - vvi:100243945 644.81