Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g531 ATGATTTCTTCTTGGAGAAGGCGGAGAGCTGGGCGGAGAGCAGCCAAGCTGCAGCAACACGCAGAAGATGATATTGGAAGCATGGAATTGACTACTCCTAATCATTTTCGGTGTCCGATATCTCTGGACTTGATGAAAGATCCGGTTACATTGTCCACAGGGATCACATATGATCGTGAGAGCATCGAGATGTGGATTGAAGCCGGAAACCGGACTTGCCCCATTACCAACCAGGTGTTGAGGAGTCTGGAGCCGATACCCAATCACACAATTCGGAAGATGATACAGGATTGGTGTGTCGAGAACCGGTCTTTTGGGATTGAGAGGATCCCAACGCCTCGAATTCCTTTGAGTTCTGTCGAGGTTACAGATATGCTTTCCAAGTTTAAGATGGCTTATCGGCGAGAGGATGAAGCTGGGTGCCGGGAGTTGGTGGCAAAGATGAAGTCAAAGGGGAAGGAAAGCGAGCGCAACAAGCGATGCATTGTTATCAATGGGGCTGCTGGTGTTTTATCAGCTGCATTTGAAGCATTCTCGAGTGCCTCTTTCGATAAGTATGTTGCAGTCTTGGAGGATATCTTGGCGGCTCTCACTTGGATGTCTCCTCTTGATGGAGAAGCCAAATCTTACCTTAGCTCAGCCGCGTCTTTGAATTTGGAGCTGCTCCTAGAACTACTGGTGGACTCTGAGAAAAGCGTATGCGAGAAGGCATTGGGTGTTCTTGATGGCATTTGCGGCTGCGAGGAAGGGAGGGAAAAGGCCTACGGCCATGCTCTAACCATGCCTGTTCTGGTTAAGAAGTTATTGCGCGTTTCTGATTTGGCTACCGAGTTCTCAGTTTCCATCCTTTGGAAGCTCAGCAAAAATGAGAAGAGGGAAGATGGAAGCGTCCTTGTTGAAGCTCTTCAAGTGGGTGCTTTTCAGAAGCTCTTGTTGCTCTTACAGGTTGGATGCTCTGACCGAACAAAGGAGAAGGCGACTGAGTTGTTGAAATTGTTGAACATTCATAGGGAGAGGTTGGAGTGCATTGACTCGATGGATTTCAAGGATCTCAAAAGGCCTTTTTGA 1068 48.03 MISSWRRRRAGRRAAKLQQHAEDDIGSMELTTPNHFRCPISLDLMKDPVTLSTGITYDRESIEMWIEAGNRTCPITNQVLRSLEPIPNHTIRKMIQDWCVENRSFGIERIPTPRIPLSSVEVTDMLSKFKMAYRREDEAGCRELVAKMKSKGKESERNKRCIVINGAAGVLSAAFEAFSSASFDKYVAVLEDILAALTWMSPLDGEAKSYLSSAASLNLELLLELLVDSEKSVCEKALGVLDGICGCEEGREKAYGHALTMPVLVKKLLRVSDLATEFSVSILWKLSKNEKREDGSVLVEALQVGAFQKLLLLLQVGCSDRTKEKATELLKLLNIHRERLECIDSMDFKDLKRPF* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5940757 5942086 - Vvi1g531 Vvi1g531 769731

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g531 355 SUPERFAMILY RING/U-box 21 107 - -
Vvi1g531 355 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Vvi1g531 355 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Vvi1g531 355 MobiDBLite consensus disorder prediction 1 26 - -
Vvi1g531 355 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Vvi1g531 355 PANTHER WDSAM1 PROTEIN 220 355 IPR045185 GO:0061630
Vvi1g531 355 PANTHER WDSAM1 PROTEIN 21 218 IPR045185 GO:0061630
Vvi1g531 355 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 220 355 - -
Vvi1g531 355 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 21 218 - -
Vvi1g531 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 107 IPR013083 -
Vvi1g531 355 CDD RING-Ubox_PUB 36 78 IPR045210 -
Vvi1g531 355 Gene3D - 126 350 IPR011989 -
Vvi1g531 355 SUPERFAMILY ARM repeat 158 341 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g531 - - - vvi:100852659 408.683
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g531 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0725 Cone19ag0724 . . . . Chy10g00211 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01122 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010787 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 32