Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g532 ATGCGGGGCCAGCTTTGTGTGGTTCTTGTTTGTCTCCTCGCCCTCACCCTTAACGTGCAGTCTCAGTCCAGTTCCGGGGATGCCGATGTAATGCAGGTTTTGAAGAAGAATCTCAACCAGCCTTCCGATTTGGGGTGGTCCGACTCCGACCCCTGTAAATGGGACGGTGTGAGCTGCGATGGCGATAGACGGGTCACACGGATTCAGATCGGAGGAAAGAATCTCAAGGGTAGTCTCCCCTCGAATCTGACCGACCTCACTGCCTTGGAGATATTGGAGGTGCAGTACAACCAACTGAGTGGGCCACTGCCGAGTCTGTCTAGGTTGAGTCTTCTGCAGAGACTCCTACTCAGCAACAACAATTTCACTTCCGTACCCTCTGGTTTCTTCGATGGAATGACATCTCTTCAAACCGTGGCTCTAGACAACAACCCCTTTTCTCCATGGGTATTTCCGGTGAGTCTTCAGGCGGCTGGTTCACTAAAATCCTTCTCTGCTAATTCTGCTGGTATTTCTGGAAAATTTCCTGAAATTTTCGAAGCGTTCCCTAGTTTGACGGATTTGCATTTGGCTTTTAATTCTCTGGAAGGTGGATTGCCTTCCAGCTTCTCTGGTTCTTCAATTCAGACTTTGTGGTTGAATGGGCAAGAGAGTGCCTCCAAACTTAATGGTACAATTGAAGTGCTACAGAACATGACATCCTTGACACAGGTTTGGTTGAATATGAATAGTTTTACAGGTCCTTTGCCCGATTTTTCCAGCTTAACGAATCTGCAAGATTTGAATTTGAGGGATAATGGATTCACGGGTCCTGTTCCATCTACCTTACTGAACCTTAAGTCTCTTAAAACGGTGAATTTGACCAATAACTTGCTTCAGGGACCCATGCCGGAATTCGCAAGTTCTGTTGCAGCGGATATGGTGGGGGTGAACATGTTTTGTTTGCCTGAACCTGGTCCCTGTAGTCAAACCGTTAATACATTACTTGAGGTTGCAAAATCCATGGGATACCCGAGTAGTCTTGCCAAGAATTGGAAAGGGAATGACCCTTGTGACCAGTGGTTTGGACTCACTTGTGATGATGGAGGCATTGCAGTTGTTAATTTGCAGAAAATGGGTCTTTCGGGTACCATTTCTTCAAACTTCTCCACTCTTGGTTCATTGCAAAAATTGATTCTTGCTGATAATAATCTCACGGGTACCATACCAGCGGAGCTTACGAATCTGCAGAACCTTAGGGAGCTTGATGTCTCAAACAATCAACTTTATGGCCAAATACCAAATTTTAGGAGTAATGTCATTGTAAAAACTGAGGGTAATCCTGATATTGGAAAAGAGGATTCTCCTGGAAATGGCGGCAAGAAATCTAACACTGTAGTGATTGTGGGTAGTGTTGTTGGTTCTGTTGGAGCAGTTTTCTTGATTGGATTGGTAGGTTTCTGTTTCTATAGAACAAGACAAAAGCACTTTGGGAGAGTGCAGAGTCCAAACACAATGGTGATTCATCCTCGTCATTCAGGGTCAGATAATGATGCTGTTAAAATCACAATTGCTAATTCAAGTGTTAATGGTGGAGGGAGTGAAACTTACAGTCACGCAAGTAGTGGGCCTAGTGACATCCAAATGATTGAGGCTGGAAGCATGGTAATTTCAATTCAAGTTTTAAGGAATGTGACTAACAATTTTAGTGAAGAAAATGTATTGGGAAGAGGAGGCTTTGGAACTGGGACTCTTAGTAGGCACCTATTTAATTGGAAGGAGGAAGGGATGAAACCCCTTGAGTGGATGAAAAGGTTGAGCATTGCCTTGGATGTTGCCAGAGGTGTTGAATACCTACATGGCTTAGCCCATCAGAGTTTCATCCATAGGGATCTTAAACCCTCCAATATTCTCCTTGGGGATGATATGCGGGCTAAAGTTGCAGATTTTGGATTGGTTCGTCTTGCCCCAGAAGGGAAAGCCTCAATTGAAACAAGACTAGCAGGAACTTTTGGGTATCTCGCACCAGAATATGCAGTAACGGGACGAGTAACTACCAAGGTTGATGTGTTCAGCTTTGGGGTGATTCTGATGGAGATTATCTCAGGAAGAAGAGCACTTGATGAAACTCAGCCCGAGGAGAGCATGCATCTTGTCACTTGGTTTCGGAGGATGCAAATTAACAAGGAGTCATTCCAGAAGTCCATCGACCAGACAATTGATCTTGATGAAGAAACCCTTGCCAGTATCAGCACTGTTGCCGAGCTGGCTGGCCACTGCTGTGCTAGGGAGCCTTATCAAAGACCAGACATGAGCCATGCTGTCAATGTGCTTTCATCTCTTGTTGAGCTCTGGAAACCCGCTGATCTAGATTCCGAAGACATGTATGGAATTGACCTTGATATGACCTTACCGCAGGCGCTCAAGAATGCTGATAATACCCAGACCAGCATTCCCACTCGACCATATGGGTTTGCAGAATCATTTACATCTGCAGATGGGCGGTAG 2487 45.2 MRGQLCVVLVCLLALTLNVQSQSSSGDADVMQVLKKNLNQPSDLGWSDSDPCKWDGVSCDGDRRVTRIQIGGKNLKGSLPSNLTDLTALEILEVQYNQLSGPLPSLSRLSLLQRLLLSNNNFTSVPSGFFDGMTSLQTVALDNNPFSPWVFPVSLQAAGSLKSFSANSAGISGKFPEIFEAFPSLTDLHLAFNSLEGGLPSSFSGSSIQTLWLNGQESASKLNGTIEVLQNMTSLTQVWLNMNSFTGPLPDFSSLTNLQDLNLRDNGFTGPVPSTLLNLKSLKTVNLTNNLLQGPMPEFASSVAADMVGVNMFCLPEPGPCSQTVNTLLEVAKSMGYPSSLAKNWKGNDPCDQWFGLTCDDGGIAVVNLQKMGLSGTISSNFSTLGSLQKLILADNNLTGTIPAELTNLQNLRELDVSNNQLYGQIPNFRSNVIVKTEGNPDIGKEDSPGNGGKKSNTVVIVGSVVGSVGAVFLIGLVGFCFYRTRQKHFGRVQSPNTMVIHPRHSGSDNDAVKITIANSSVNGGGSETYSHASSGPSDIQMIEAGSMVISIQVLRNVTNNFSEENVLGRGGFGTGTLSRHLFNWKEEGMKPLEWMKRLSIALDVARGVEYLHGLAHQSFIHRDLKPSNILLGDDMRAKVADFGLVRLAPEGKASIETRLAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMEIISGRRALDETQPEESMHLVTWFRRMQINKESFQKSIDQTIDLDEETLASISTVAELAGHCCAREPYQRPDMSHAVNVLSSLVELWKPADLDSEDMYGIDLDMTLPQALKNADNTQTSIPTRPYGFAESFTSADGR* 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5948428 5953185 - Vvi1g532 Vvi1g532 769732

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g532 828 Gene3D Ribonuclease Inhibitor 323 447 IPR032675 -
Vvi1g532 828 Gene3D Phosphorylase Kinase; domain 1 525 576 - -
Vvi1g532 828 Pfam Leucine rich repeat N-terminal domain 26 60 IPR013210 -
Vvi1g532 828 Pfam Leucine rich repeat N-terminal domain 326 360 IPR013210 -
Vvi1g532 828 Pfam Leucine rich repeat 367 422 IPR001611 GO:0005515
Vvi1g532 828 SMART LRR_typ_2 182 205 IPR003591 -
Vvi1g532 828 SMART LRR_typ_2 409 431 IPR003591 -
Vvi1g532 828 SMART LRR_typ_2 109 132 IPR003591 -
Vvi1g532 828 SMART LRR_typ_2 385 408 IPR003591 -
Vvi1g532 828 SMART LRR_typ_2 255 279 IPR003591 -
Vvi1g532 828 SUPERFAMILY L domain-like 41 429 - -
Vvi1g532 828 Gene3D Ribonuclease Inhibitor 24 314 IPR032675 -
Vvi1g532 828 SUPERFAMILY Protein kinase-like (PK-like) 550 785 IPR011009 -
Vvi1g532 828 PANTHER OSJNBA0070M12.3 PROTEIN 5 575 - -
Vvi1g532 828 PANTHER OSJNBA0070M12.3 PROTEIN 576 828 - -
Vvi1g532 828 Gene3D Transferase(Phosphotransferase) domain 1 577 788 - -
Vvi1g532 828 ProSiteProfiles Protein kinase domain profile. 458 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g532 828 ProSitePatterns Serine/Threonine protein kinases active-site signature. 620 632 IPR008271 GO:0004672|GO:0006468
Vvi1g532 828 SMART serkin_6 483 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g532 828 PANTHER RECEPTOR PROTEIN KINASE TMK1 5 575 - -
Vvi1g532 828 PANTHER RECEPTOR PROTEIN KINASE TMK1 576 828 - -
Vvi1g532 828 Pfam Protein kinase domain 593 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g532 K00924 E2.7.1.-; kinase [EC:2.7.1.-] - vvi:100249092 1085.86
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76510 PF00069 Pkinase 1.10E-28 CL0016 Vvi PK