Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g534 ATGTTGCAAGATCAATTCAGCGTTAGTGTTAACCATGTTCACGCCCTCGCCATTCTCGTCTCCACCTTTCATTATTACAAAAACCCATCTGCCATTGACCAAGAAACTTTTGCTGAGTACACGGCGAGAACAGCTTTTGAGCGGCCTTTACTGAGTGGGGTGGCCTATGCACAAAGAGTGGCTTATTCAGAGAGGGAGAGATTTGAGAAGCAACATGGGTGGACTATAAAGACAATGAAGAGAGAGGCTTCGCCGATTCGAGACGAGTATGCACCTGTGATATTTTCTCAGGAAACTGTTTCCTACATTGAATCACTTGATATGATGTCTGGCGAGGAGGATCGGGAAAACATTTTGAGGGCTAGGGCTACTGGGAAAGCCGTCTTGACAAGCCCCTTCAGGCTGCTTGGTTCTCATCATCTTGGCGTTGTGTTGACATTCCCTGTTTACAAGTCCAAGCTTCCTCCCAACCCAACAGTGGAACAGCGCATTGAAGCAACTGCAGGATACCTTGGTGGAGCCTTTGATGTGGAGTCCCTGGTGGAGAATTTACTTGGGCAACTTGCTGGGAATCAGGCAATTTTGGTGAATGTCTATGATGTAACTAATTCTTCTGATCCCTTGGTTATGTATGGACGCCAATATCAAGATGTTGACATGTCCCTTTTGCATGAGAGCAAGCTTGACTTTGGAGATCCATTCAGGAAGCACCAAATGATATGTAGATATCATCAGAAGGAACCCACATCATGGACAAGCCTCACCACCGCATTTCTATTCTTTGTAATCGGTTTATTAGTAGGTTATATCTTGTATGGTGCCGCAATTCACATTGTTAAAGTTGAGGACGATTTCCATGAAATGCAGGAATTAAAAGTCCGAGCAGAAGCTGCTGATGTCGCCAAATCCCAGTTTCTGGCTACTGTTTCTCATGAAATTAGGACACCCATGAATGGCATCCTAGGAATGCTTGCTCTGCTCCTAGATACCGATTTGAGTTCAACCCAGAGAGATTATGCTCAAACTGCTCAAGCCTGTGGAAAGGCACTAATAACATTAATAAATGAAGTTCTTGACCGGGCAAAAATTGAAGCTGGAAAATTAGAGCTCGAAGCAGTCCCCTTCAACCTTCGATCCATACTAGATGATGTCCTCTCTCTATTTTCTGAGAAGTCTAGGCACAAAGGTCTTGAGCTGGCCGTGTTTGTTTCTGATAAAGTTCCTGAAATGGTTATTGGGGATCCTGGGAGATTTCGACAGATAATTACAAATCTTGTGGGCAACTCTGTTAAATTTACTGAGCGAGGGCACATATTTGTTCAAGTCCATTTAGCTGAACACACAAAGGCTCTAATGGATGCTAAAGCTGAGACATCTTCTGAGAAAGTCACTTTGATGGTGTCTGTGGAGGATACAGGAATTGGGATCCCTTTGCGTGCTCAGGGTCGAGTTTTCACACCCTTTATGCAGGCAGACAGTTCAACCTCTAGAAATTATGGAGGAACTGGTATTGGTCTGAGTATCAGCAAGTGTTTGGTAGAGCTGATGGGTGGTCAGATAAAATTCATAAGTCGGCCTCAGATTGGAAGCACATTTTCGTTTACTGCTGACTTTGGGAGGTTTGATGGAAGACCGGTTAGAGCTATTGTAACCAAGTACCATCTGAAGAGACTTGGAATCCTGGTTGAAGTTGCTAATAGCATCAAGAAGGCAGTTGCAATAACTGGAAAAAATGGTTCTCTGACATCTGGAAGTGGAAATCAGCCAGATATGATTCTGGTTGAGAAGGATTCATGGATTTCTGAGGAGGATGCTGATCTGAATCTTCGGCTATTGGACTGGAAACAGAATAGACACACATTGAAATTACCTAAGATGATCCTTCTTGCAACCAATATTAGCAGTGCAGAGTTTGATAAAGCAAAGGCAGCTGGCTTTGCAGATACTGTGATCATGAAACCTTTGAGGGCTAGCATGGTTGCAGCATGTCTTCAACAAGTGCTAGGGTTGGGGAAGAAGAGGCAGCAAGGGAAAGACATGCTTAATGGATCTGCTTTTCTTCAGAGCTTACTCTGTGGCAAAAAAATATTGGTTGTTGATGACAATAAGGTAAACCGCAGAGTGGCTGCAGGTGCACTCAAAAAGTTTGGGGCTGATGTGGAGTGTGCTGAGAGTGGCAAAGCTGCATTGCAATTGCTTCAGTTACCACACAACTTTGATGCTTGCTTCATGGATATTCAGATGCCAGAAATGGATGGGTTTGAAGCAACACGTCGAATACGGCTGATCGAGAGTAAGGCAAATGAACAGATGAATGGAGGATGCACCCCTGAGGGAGCTGCTACAAAAGGTGAGTGGCATGTGCCAATATTAGCCATGACAGCTGATGTGATTCACGCCACATACGACAAGTGCCTGAAATGTGGGATGGATGGCTATGTCTCAAAGCCTTTTGAGGAAGAGAATCTGTATCAGGCGGTTGCGAAGTTCTTCAAATCCAAACCCATTTCAGAATCGTAA 2520 44.25 MLQDQFSVSVNHVHALAILVSTFHYYKNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVAYSERERFEKQHGWTIKTMKREASPIRDEYAPVIFSQETVSYIESLDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTVEQRIEATAGYLGGAFDVESLVENLLGQLAGNQAILVNVYDVTNSSDPLVMYGRQYQDVDMSLLHESKLDFGDPFRKHQMICRYHQKEPTSWTSLTTAFLFFVIGLLVGYILYGAAIHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLDTDLSSTQRDYAQTAQACGKALITLINEVLDRAKIEAGKLELEAVPFNLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPEMVIGDPGRFRQIITNLVGNSVKFTERGHIFVQVHLAEHTKALMDAKAETSSEKVTLMVSVEDTGIGIPLRAQGRVFTPFMQADSSTSRNYGGTGIGLSISKCLVELMGGQIKFISRPQIGSTFSFTADFGRFDGRPVRAIVTKYHLKRLGILVEVANSIKKAVAITGKNGSLTSGSGNQPDMILVEKDSWISEEDADLNLRLLDWKQNRHTLKLPKMILLATNISSAEFDKAKAAGFADTVIMKPLRASMVAACLQQVLGLGKKRQQGKDMLNGSAFLQSLLCGKKILVVDDNKVNRRVAAGALKKFGADVECAESGKAALQLLQLPHNFDACFMDIQMPEMDGFEATRRIRLIESKANEQMNGGCTPEGAATKGEWHVPILAMTADVIHATYDKCLKCGMDGYVSKPFEEENLYQAVAKFFKSKPISES* 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 5989545 5998606 - Vvi1g534 Vvi1g534 769734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g534 839 CDD REC_hyHK_CKI1_RcsC-like 696 827 - -
Vvi1g534 839 ProSiteProfiles Response regulatory domain profile. 695 831 IPR001789 GO:0000160
Vvi1g534 839 Pfam His Kinase A (phospho-acceptor) domain 301 366 IPR003661 GO:0000155|GO:0007165
Vvi1g534 839 SMART HKATPase_4 413 540 IPR003594 -
Vvi1g534 839 PANTHER HISTIDINE KINASE 4 1 459 - -
Vvi1g534 839 PANTHER HISTIDINE KINASE 4 456 541 - -
Vvi1g534 839 PANTHER HISTIDINE KINASE 4 542 835 - -
Vvi1g534 839 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 413 538 IPR003594 -
Vvi1g534 839 Gene3D - 277 364 - -
Vvi1g534 839 SMART CHASE_2 28 213 IPR006189 -
Vvi1g534 839 SMART REC_2 694 827 IPR001789 GO:0000160
Vvi1g534 839 ProSiteProfiles Response regulatory domain profile. 537 668 IPR001789 GO:0000160
Vvi1g534 839 CDD HisKA 301 362 IPR003661 GO:0000155|GO:0007165
Vvi1g534 839 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 355 535 IPR036890 -
Vvi1g534 839 PANTHER TWO-COMPONENT HISTIDINE KINASE 542 835 - -
Vvi1g534 839 PANTHER TWO-COMPONENT HISTIDINE KINASE 456 541 - -
Vvi1g534 839 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 459 - -
Vvi1g534 839 ProSiteProfiles Histidine kinase domain profile. 308 540 IPR005467 -
Vvi1g534 839 SUPERFAMILY CheY-like 693 831 IPR011006 -
Vvi1g534 839 Pfam Response regulator receiver domain 696 827 IPR001789 GO:0000160
Vvi1g534 839 SUPERFAMILY CheY-like 542 669 IPR011006 -
Vvi1g534 839 Gene3D - 365 540 IPR036890 -
Vvi1g534 839 Gene3D CHASE domain 32 247 IPR042240 -
Vvi1g534 839 PRINTS Bacterial sensor protein C-terminal signature 465 479 IPR004358 GO:0016310|GO:0016772
Vvi1g534 839 PRINTS Bacterial sensor protein C-terminal signature 483 493 IPR004358 GO:0016310|GO:0016772
Vvi1g534 839 PRINTS Bacterial sensor protein C-terminal signature 500 518 IPR004358 GO:0016310|GO:0016772
Vvi1g534 839 PRINTS Bacterial sensor protein C-terminal signature 524 537 IPR004358 GO:0016310|GO:0016772
Vvi1g534 839 CDD HATPase_EvgS-ArcB-TorS-like 418 538 - -
Vvi1g534 839 SMART HisKA_10 301 366 IPR003661 GO:0000155|GO:0007165
Vvi1g534 839 Gene3D - 541 676 - -
Vvi1g534 839 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 287 367 IPR036097 GO:0000155|GO:0007165
Vvi1g534 839 Gene3D - 689 838 - -
Vvi1g534 839 ProSiteProfiles CHASE domain profile. 28 240 IPR006189 -
Vvi1g534 839 Pfam CHASE domain 31 211 IPR006189 -
Vvi1g534 839 Gene3D - 1 31 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14517 PF03924 CHASE 3.10E-38 CL0165 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g534 K14489 - jre:108993473 1372.07