Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g537 ATGATATCTCCTTCAGATGTCTGCAATTACATCATTCAATTTTTCAAATACACAGATGGCATGTCAGATTTTCCTGCTGCTGGTGTAGTTTTGAAAGACTTGACAGCAACTCAGGCAAGCCTTAGAAAAGATGCAGCTCCTCTTCCACCACCTACTTCTCTCTCTCCAAAATCTTCCATTTACAATATGAGCTCTTCAAGTGTACAGCGGGATCTGCTGCTGCATGATCTCCGTCAGAATGACCTCAAAGCCTCCCTCATTGGTGATCTAAAGACCAACGATGAATTTCGGTTTGGGAAGTCATCTAATAAAGATATGTTTGATAGCTTGGAAAGCATTGTACGGATTAAGGAAGCCGAAGCCAGGATGTTCCAGAATCGGGCAGATGAAGCCCAGAGAGAAGCAGAGGGGAAACTGAGGAAAGGCGGAGGAAGAAACTGGAGGAGCTGA 450 44.44 MISPSDVCNYIIQFFKYTDGMSDFPAAGVVLKDLTATQASLRKDAAPLPPPTSLSPKSSIYNMSSSSVQRDLLLHDLRQNDLKASLIGDLKTNDEFRFGKSSNKDMFDSLESIVRIKEAEARMFQNRADEAQREAEGKLRKGGGRNWRS* 150
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6018855 6024162 + Vvi1g537 Vvi1g537 769737

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g537 149 Pfam Coiled-coil region of Oberon 73 137 IPR032535 -
Vvi1g537 149 Coils Coil 114 141 - -
Vvi1g537 149 MobiDBLite consensus disorder prediction 126 143 - -
Vvi1g537 149 MobiDBLite consensus disorder prediction 126 149 - -
Vvi1g537 149 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 137 IPR004082 -
Vvi1g537 149 PANTHER PROTEIN OBERON 3 1 137 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g537 - - - vvi:100245684 258.455
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g537 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00963 . . . . . . . Cmo04g02238 Cmo15g00924 Cma04g02146 Cma15g00885 Car04g02079 Car15g00832 Cpe13g00430 . Bhi12g00970 . . . . . Lcy10g1592 Cla01g00657 Cam01g0687 Cec01g0679 Cco01g0707 Clacu01g0676 Cmu01g0650 Cre09g1857 Lsi09g00710 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069196 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1