Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g54 ATGCGGGTGATGTTCGTGACGGGGGACGCGGGCGTGAGGACTGTGAGGTATGGCTTGAGCAGGGACGCGATGCACAGGGTGGTGACGGCGGCGGTGGGGAGATATGAGAGGGAGGACATGTGTGACTCGCCAGCGAATGAGAGTGTTGGGTGGAGAGATCCGGGTTTTATTCAAGATGCGGTGATGAGGAATTTGAAGAAAGGGAAGAGATATTATTATAAGGTTGGAAGTGATTCAGGAGGTTGGAGCGCAATTCACAACTTTATGTCACGGGATATGGACTCTGAAAAAACAATAGCTTTTCTATTTGGTGACATGGGGACAGCAACACCATACTCAACCTTTCTTCGTACACAAGAGGAAAGCAAGTCAACCGTTAAATGGATCCTCCGTGACATTGAGGCTCTTGATGACAACCCTGCCTTCATCTCGCATATTGGAGATATTAGCTATGCTAGAGGTTATTCATGGTTGTGGGACAATTTTTTCACTCAGTTTATGGAACAGATGGTGGCGGTGAATGTGGAGTGCCCTACAGCCTTAAGTTCAAAATGCCTGGAAACTCTTCAGAACTAA 576 47.57 MRVMFVTGDAGVRTVRYGLSRDAMHRVVTAAVGRYEREDMCDSPANESVGWRDPGFIQDAVMRNLKKGKRYYYKVGSDSGGWSAIHNFMSRDMDSEKTIAFLFGDMGTATPYSTFLRTQEESKSTVKWILRDIEALDDNPAFISHIGDISYARGYSWLWDNFFTQFMEQMVAVNVECPTALSSKCLETLQN* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 586452 588903 + Vvi1g54 Vvi1g54 769254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g54 191 SUPERFAMILY Metallo-dependent phosphatases 102 173 IPR029052 -
Vvi1g54 191 Gene3D - 94 180 IPR029052 -
Vvi1g54 191 Gene3D - 1 92 - -
Vvi1g54 191 SUPERFAMILY Purple acid phosphatase, N-terminal domain 1 90 IPR008963 GO:0003993|GO:0046872
Vvi1g54 191 Pfam Purple acid Phosphatase, N-terminal domain 1 88 IPR015914 GO:0003993|GO:0046872
Vvi1g54 191 PANTHER PURPLE ACID PHOSPHATASE-RELATED 1 166 - -
Vvi1g54 191 PANTHER PURPLE ACID PHOSPHATASE 1 166 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g54 K22390 - vvi:100261141 344.739