Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g540 ATGTTTCGGCGGTCAACCTCCGGTTTAACAGTGCTAGCACACTCGTTTGGCATCTTATCTCTCATCCTATTGCTGTTTTGGTTATTGCATTATCGTGGAGGTCTTAATCTTGAATCTGACATTTCAGAACGTATTTTTAATGTTCACCCATTCATGATGTTCTTTGGGCTTATTTTTCTCTCGGGTGAAGGAATGATGGCATACAAGACGATAGCAGCAGAAAAACCTGTCCAGAAGTTTATTCACATGCTGCTTCACCTGATTGCTATTTGTATGGGAATTATTGGAATACATGCTGTTTTAAAGTTTCATAACAAGGAGAACATAGAAGATTTCTATAGCTTGCATTCATGGGTAGGCATTGCCACCTTCAGCATTTTTCTCTTGCAGTGGTTGGTTGGGTTTGTGTTGTTCATGTTTCCAAAAGCTTCGCCAGGGACAAGAGCAAGGGCGCTTCCATGGCACATATGTGGGGGTAGGGCCCTATTATACATGGCAATATCCTCTGCCCTGACCGGGTTGATGGAGAAAGCTACACTCTTGGGAGACAAGTACCACTCGAATCAAGCTCGTACAATCAACTTCCTTGGACTTTCAATCCTTCTCTTTGGCATTTTCGTTGATTTTTCCCTTGTGTTTGCTCGTTATGTGTGA 654 42.51 MFRRSTSGLTVLAHSFGILSLILLLFWLLHYRGGLNLESDISERIFNVHPFMMFFGLIFLSGEGMMAYKTIAAEKPVQKFIHMLLHLIAICMGIIGIHAVLKFHNKENIEDFYSLHSWVGIATFSIFLLQWLVGFVLFMFPKASPGTRARALPWHICGGRALLYMAISSALTGLMEKATLLGDKYHSNQARTINFLGLSILLFGIFVDFSLVFARYV* 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6034339 6035646 - Vvi1g540 Vvi1g540 769740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g540 217 ProSiteProfiles Cytochrome b561 domain profile. 12 212 IPR006593 -
Vvi1g540 217 PANTHER TRANSMEMBRANE ASCORBATE FERRIREDUCTASE 3-RELATED 2 214 - -
Vvi1g540 217 PANTHER CYTOCHROME B561-RELATED 2 214 IPR043205 GO:0016491
Vvi1g540 217 Gene3D - 4 215 - -
Vvi1g540 217 CDD Cyt_b561_ACYB-1_like 39 182 - -
Vvi1g540 217 SMART 561_7 48 174 IPR006593 -
Vvi1g540 217 Pfam Eukaryotic cytochrome b561 48 179 IPR006593 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g540 K08360 - vvi:100244034 422.165