Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g542 ATGGCTTCTCTTCTCTCTCAATCCGCTCTGTTTCAATCTAAGTCCTCGCTGCCTTTCCAAACCCTAGAGTCTCCTCAGCTGCGTTGCGGATCCGTTGTGTTTAAGGAGAAAGATGGGTTTGCTCTCAAGGCGTCGATGTCTATTGCCGAATCGAACTCCAGGTCGCCGGTTTTGGACAACGGGACGAAGAATCCGATCGTCGTCATTGATAATTACGACAGCTTCACTTACAATCTTTGCCAGTACTTGGGAGAGCTTGGGTGTAACTTTGAGGTCTACCGGAATGATGAGCTTAGTGTGGAGGAATTAAAAAAGAAAAATCCAAGAGGGGTGCTTATATCCCCAGGACCAGGTACACCTCAAGATTCAGGGATATCATTGCAGACTGTTTTGGAACTTGGACCTGTTGTACCCTTGTTTGGTGTCTGTATGGGGCTACAGTGCATCGGAGAAGCTTTTGGAGGCAAAACAATGTTCAGTGGGAAGATTGTACGTTCTCCTTTTGGCGTTATGCATGGAAAAAGCTCTCCTGTATATTATGATGAAAAAGGAGAAGATGGCTTGTTTTCAGGGTTATCAAATCCTTTCACTGCTGGTAGATATCATAGTCTTGTGATTGAAAAGGATACCTTTCCCAATGAAGCACTTGAGATTACAGCATGGACAGAGGATGGACTGATAATGGCTGCCCGTCACAAAAAATATAAGCATCTGCAGGGGGTTCAGTTCCATCCAGAGAGCATTATAACCAGTGAAGGCAGGGGGATTGTTCGCAATTTTGTCAGAATGATTGAGAGAAGCGAGTCTAAATATCATAACTAG 822 44.65 MASLLSQSALFQSKSSLPFQTLESPQLRCGSVVFKEKDGFALKASMSIAESNSRSPVLDNGTKNPIVVIDNYDSFTYNLCQYLGELGCNFEVYRNDELSVEELKKKNPRGVLISPGPGTPQDSGISLQTVLELGPVVPLFGVCMGLQCIGEAFGGKTMFSGKIVRSPFGVMHGKSSPVYYDEKGEDGLFSGLSNPFTAGRYHSLVIEKDTFPNEALEITAWTEDGLIMAARHKKYKHLQGVQFHPESIITSEGRGIVRNFVRMIERSESKYHN* 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6048755 6061508 - Vvi1g542 Vvi1g542 769742

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g542 273 PANTHER ANTHRANILATE SYNTHASE BETA SUBUNIT 1, CHLOROPLASTIC 41 270 - -
Vvi1g542 273 Gene3D - 64 263 IPR029062 -
Vvi1g542 273 TIGRFAM trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 66 262 IPR006221 -
Vvi1g542 273 CDD GATase1_Anthranilate_Synthase 66 261 IPR006221 -
Vvi1g542 273 Pfam Glutamine amidotransferase class-I 67 261 IPR017926 -
Vvi1g542 273 PANTHER MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED 41 270 - -
Vvi1g542 273 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 65 270 - -
Vvi1g542 273 PRINTS Glutamine amidotransferase superfamily signature 111 120 - -
Vvi1g542 273 PRINTS Glutamine amidotransferase superfamily signature 138 149 - -
Vvi1g542 273 PRINTS Glutamine amidotransferase superfamily signature 240 253 - -
Vvi1g542 273 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 108 122 - -
Vvi1g542 273 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 138 154 - -
Vvi1g542 273 PRINTS Anthranilate synthase component II signature 66 80 - -
Vvi1g542 273 PRINTS Anthranilate synthase component II signature 111 120 - -
Vvi1g542 273 PRINTS Anthranilate synthase component II signature 170 178 - -
Vvi1g542 273 PRINTS Anthranilate synthase component II signature 193 205 - -
Vvi1g542 273 PRINTS Anthranilate synthase component II signature 240 253 - -
Vvi1g542 273 SUPERFAMILY Class I glutamine amidotransferase-like 65 266 IPR029062 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g542 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] - vvi:100257728 517.309
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g542 . . . . . Bpe10g01010 . Bma15g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003870 1 2 1 1 1 2 1 4 3 0 2 2 1 1 1 1 2 1 1 4 1 3 1 1 1 1 1 2 1 1 45