Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g545 ATGGCTTTCTATCTTGTGTTCACAGCCCTTGTTGGGCTCTGCTCGGTTTCTTCAGTAGCAGAGCTTCTGCGGTTGGAACAGCAGGCTAAAGCTGACGGGTCCCTCAGCTTTCTGGTGGTGGGTGACTGGGGAAGAAGAGGATCTTTCAACCAATCTCGAGTTGCACTTCAGATGGGAAGGGTTGGAGAGGAGTTGGACATAGATTTTGTAGTATCGACTGGAGATAATTTCTACGACAATGGATTGTCGGGCATCCACGACACAGCATTCGAGAAGTCGTTCAGCAAAGTGTACACTGCCCCAAGCTTGCAAAAGCAATGGTACAATGTTTTGGGTAACCATGACTACAGAGGAAAAGTTGAGGCTCAACTGAGTCCCATTCTTACCAAGATGGACAGCAGATGGCTTTGCTTGAGGTCTTTTATTCTGAATGCAGAAATTGTAGAGTTTTTCTTTGTAGATACGACACCATTTGTGGACAAATACTTCACAGATCCTGAGGATCATGACTATGACTGGAAGGGCGTCCTTCCCCGTCAGGCTTATCTCTCAAACCTCCTCCAGGATGTGGACACGGCATTAAGAGATTCCACAGCCAAATGGAAGATTGTGGTTGGCCACCATACAATTAGAAGTGCGGGACATCACGGGGACACAGTGGAGCTTGTAGATCAGCTTCTCCCAATCCTTCAGGCAAACAGTGTGGATCTTTACATAAACGGACATGACCATTGCTTGGAACACATCAGTTCCCCCGACAGTCCAATTCAATTTCTGACTAGTGGTGGCGGGTCAAAGGCATGGAGGGGCGATGTGCAATGGTGGAATCCAGAGGAACTCAAGTTCTACTACGACGGGCAAGGGTTCATGTCAGTGCAGATTACTGCATCTCAAGTTGATGTTGCATTCTATGATGTTTTTGGTGAGGTTTTGCATAAATGGAGTACGTCCAAAGAGCTCAACCTTCCAATGTAG 975 47.08 MAFYLVFTALVGLCSVSSVAELLRLEQQAKADGSLSFLVVGDWGRRGSFNQSRVALQMGRVGEELDIDFVVSTGDNFYDNGLSGIHDTAFEKSFSKVYTAPSLQKQWYNVLGNHDYRGKVEAQLSPILTKMDSRWLCLRSFILNAEIVEFFFVDTTPFVDKYFTDPEDHDYDWKGVLPRQAYLSNLLQDVDTALRDSTAKWKIVVGHHTIRSAGHHGDTVELVDQLLPILQANSVDLYINGHDHCLEHISSPDSPIQFLTSGGGSKAWRGDVQWWNPEELKFYYDGQGFMSVQITASQVDVAFYDVFGEVLHKWSTSKELNLPM* 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6083421 6086124 - Vvi1g545 Vvi1g545 769745

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g545 324 PIRSF Acid_Ptase_5 1 323 IPR024927 GO:0003993
Vvi1g545 324 SUPERFAMILY Metallo-dependent phosphatases 34 318 IPR029052 -
Vvi1g545 324 PANTHER TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 6 320 - -
Vvi1g545 324 CDD MPP_ACP5 35 308 IPR024927 GO:0003993
Vvi1g545 324 Gene3D - 30 321 IPR029052 -
Vvi1g545 324 PANTHER PURPLE ACID PHOSPHATASE 3 6 320 - -
Vvi1g545 324 Pfam Calcineurin-like phosphoesterase 36 245 IPR004843 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g545 K14379 ACP5; tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2] - vvi:100261163 668.307
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g545 . . . . Bpe13g00994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01958 . . . . . . . . . . . . Cmo15g00921 . Cma15g00883 . Car15g00830 Cpe13g00432 . Bhi12g00974 . . . . . Lcy10g1587 Cla01g00660 Cam01g0690 Cec01g0682 Cco01g0710 Clacu01g0679 Cmu01g0653 Cre09g1853 Lsi09g00714 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004118 1 3 1 2 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 2 2 3 2 1 5 1 1 43