Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g546 ATGTCTTCAGTGACAGTGCCACCCGTCTTGACCTCGCCTCGCGATGACGCTATTCAGCTCTACCGGGCTTTCAAGGGGTTAGGATGTGACACTGCAGCTGTTGTCCATATTCTTGCACACCGGGATGTTACACAACGCGGTCTCATCCAACAAGAATATAGAGCCATGTATTCTGAGGACCTGGTTAAACGTTTGTCTTCAGAGCTTAGTGGGAATGTCAAGAGAGCAGTGTTACTCTGGGTACAAGATCCTGCAGGACGGGATGCTTCCATAGTGAGGCAAGCATTAAGTGGAAATGTGGTTGATCTCAAAGCTGCTACTGAAGTAATATGTTCCCGCACACCATCCCAGATACAACATTTTAAACAACTGTATTTTGCAATGTTTGGTGTTTACCTTGAGCAAGATATCGAATATCAAGCATCTGGCGATCATAAAAAGTTGCTACTTGCATATGTAACAGTGCCACGCTATGAAGGCCCAGAAGTTGATAGAGCAATGGTCGAGAAGGATGCCAAAGCTCTCTATAAAGCTGGGGAGAAGAAATTGGGAACTGATGAGAATACTTTCATACGTATTTTTTCTGAAAAAAGCAGGGCTCATTTAGCTGCTGTTAGTACTGCTTACCACAGTGTATATGGTAACTCATTGCAAAAGGCAGTAAAAAGTGAAACATCTGGGCATTTTGAGTTTGCCCTTTTGACTATCTTACAGTCTGCTGAGAATTCTGGGAAGTACTTTGCAAAGGTACTGCACAAGGCGATGAAGGGCCTGGGAACAGATGACACTACACTAACCAGGATAATTGTGACAAGAGCCGAGATTGATCTACAGTACATAAAGCAAGAGTACAGAAAGAAATATGGGAAGACATTAAATGATGCTGTTCATTCAGAGACTTCAGGGCATTACAAGGCGTTTCTTCTTGCTCTCTTGGGCCCCAACCATTAG 951 43.74 MSSVTVPPVLTSPRDDAIQLYRAFKGLGCDTAAVVHILAHRDVTQRGLIQQEYRAMYSEDLVKRLSSELSGNVKRAVLLWVQDPAGRDASIVRQALSGNVVDLKAATEVICSRTPSQIQHFKQLYFAMFGVYLEQDIEYQASGDHKKLLLAYVTVPRYEGPEVDRAMVEKDAKALYKAGEKKLGTDENTFIRIFSEKSRAHLAAVSTAYHSVYGNSLQKAVKSETSGHFEFALLTILQSAENSGKYFAKVLHKAMKGLGTDDTTLTRIIVTRAEIDLQYIKQEYRKKYGKTLNDAVHSETSGHYKAFLLALLGPNH* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6088272 6096479 - Vvi1g546 Vvi1g546 769746

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g546 316 Gene3D Annexin 244 314 IPR037104 GO:0005509|GO:0005544
Vvi1g546 316 ProSiteProfiles Annexin repeat profile. 166 238 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 Pfam Annexin 171 236 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 Pfam Annexin 246 311 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 Pfam Annexin 16 79 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 Pfam Annexin 87 151 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 Gene3D Annexin 83 153 IPR037104 GO:0005509|GO:0005544
Vvi1g546 316 PANTHER ANNEXIN 7 316 - -
Vvi1g546 316 PANTHER ANNEXIN 7 316 - -
Vvi1g546 316 SUPERFAMILY Annexin 2 315 IPR037104 GO:0005509|GO:0005544
Vvi1g546 316 SMART annex3 28 80 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 SMART annex3 259 311 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 SMART annex3 101 152 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 SMART annex3 184 236 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 ProSiteProfiles Annexin repeat profile. 242 313 IPR018502 GO:0005509|GO:0005544
Vvi1g546 316 ProSitePatterns Annexin repeat signature. 259 311 IPR018252 GO:0005509|GO:0005544
Vvi1g546 316 Gene3D Annexin 1 82 IPR037104 GO:0005509|GO:0005544
Vvi1g546 316 Gene3D Annexin 157 242 IPR037104 GO:0005509|GO:0005544
Vvi1g546 316 PRINTS Annexin family signature 25 47 IPR001464 GO:0005509|GO:0005544
Vvi1g546 316 PRINTS Annexin family signature 65 81 IPR001464 GO:0005509|GO:0005544
Vvi1g546 316 PRINTS Annexin family signature 92 113 IPR001464 GO:0005509|GO:0005544
Vvi1g546 316 PRINTS Annexin family signature 175 201 IPR001464 GO:0005509|GO:0005544
Vvi1g546 316 PRINTS Annexin family signature 255 275 IPR001464 GO:0005509|GO:0005544
Vvi1g546 316 PRINTS Annexin family signature 299 312 IPR001464 GO:0005509|GO:0005544
Vvi1g546 316 ProSiteProfiles Annexin repeat profile. 11 82 IPR018502 GO:0005509|GO:0005544
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g546 K17098 ANNAT; annexin D - vvi:100250931 621.313
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g546 . . . . . . . Bma15g00014 . . . . . . . . . . . . . . . . Cla05g02669 Cam05g2866 Cec05g2903 Cco05g2935 Clacu05g2870 Cmu05g2716 Cre05g2833 Cone13ag0722 Cone19ag0721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003010 1 2 1 1 0 2 2 2 2 0 2 2 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 3 2 1 53