Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g55 ATGATTCGTGGGAACTCATTGAGCTCCTCCCCAGTGGGTGCCATAGATTTCTATGTTCGTATGCTTTTGTGTGGGGTTGAACCCAATTCTTATACTTTTCCTTTCCTGTTGAAGTCTTGTGCAAAAGTTGGAGCTACCCAAGAAGGGAAACAGATCCATGGCCATGTTTTGAAGCTTGGACTTGATTCTCTTCGAGATGCGGTTTCTTTTACTGCCCTGATCACGGGTTATACTTTGCGGGGTTGTTTGGATGATGCAAGACGGCTTTTTGAAGAAATTCCAGTGAGAGATGCAGTGTCTTGGAATGCTATGATTGCTGGGTATGCCCAAAGTGGTCGATTTGAAGAGGCATTGGCGGATTTGTTTGAGGGGATATGTGAAAAGGATATAATCTCCTGGAATGTTATGATAGGTGGACTAGCTATGCATGGGCATGCAAATATGGCCCTTGAGCTTTTCAGACAAATGAGAGATGAAGGATTCGAACCAGATGATATCACTTTTGTTGGTGTTTTATCAGCTTGCAGCCATGCTGGTTTGGTAGAACTCGGTCGTCAATGTTTTAGCTCAATGGTTGAAGATTATGACATTTCACCAAAACTGCAACACTATGGCTGTATGATAGATCTACTAGGCCGAGCAGGGCTATTTGATGAAGCAGAAGCCCTGATGAAGAACATGGAGATGAAGCCAGATGGTGCTATATGGGGTTCTCTACTTGGAGCTTGCAGGGTCCATGGAAATGTAGAGTTGGGGGAATTTGCTGCTAAACACCTTTTTGAATTAGAGCCTGAAAACCCTGGGGCGTATGTGCTTTTATCAAACATTTATGCAACCGCTGGTAGATGGGATGATGTAGCAAGAATAAGAACCAAGCTGAACGATAAGGGGATGAAGAAGGTCCCTGGATGTAGCTCAATTGAGGTGGATAGTGTTGTTCACGAGTTTCTTGTTGGTGACAAAAAAATGAAAGAAACTGGTCTGATGCCTAACATATCCATAACCCAACAATGTGAAATATGA 1023 43.3 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLDSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALADLFEGICEKDIISWNVMIGGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKKMKETGLMPNISITQQCEI* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 590868 593407 + Vvi1g55 Vvi1g55 769255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g55 340 Gene3D Tetratricopeptide repeat domain 122 335 IPR011990 GO:0005515
Vvi1g55 340 Gene3D Tetratricopeptide repeat domain 55 121 IPR011990 GO:0005515
Vvi1g55 340 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 120 320 - -
Vvi1g55 340 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 139 - -
Vvi1g55 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Vvi1g55 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 96 IPR002885 -
Vvi1g55 340 Pfam E motif 246 308 IPR046848 -
Vvi1g55 340 PANTHER OS07G0662700 PROTEIN 1 139 - -
Vvi1g55 340 PANTHER OS07G0662700 PROTEIN 120 320 - -
Vvi1g55 340 Pfam PPR repeat family 128 176 IPR002885 -
Vvi1g55 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 128 IPR002885 -
Vvi1g55 340 SUPERFAMILY TPR-like 80 285 IPR011990 GO:0005515
Vvi1g55 340 Pfam PPR repeat 99 118 IPR002885 -
Vvi1g55 340 Pfam PPR repeat 204 229 IPR002885 -
Vvi1g55 340 Pfam PPR repeat 68 93 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 204 228 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 99 118 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 131 164 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 68 93 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g55 - - - vvi:100256055 422.165
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g55 . . . . . . . . . . . Cma18g00483 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069253 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1