Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g55 ATGATTCGTGGGAACTCATTGAGCTCCTCCCCAGTGGGTGCCATAGATTTCTATGTTCGTATGCTTTTGTGTGGGGTTGAACCCAATTCTTATACTTTTCCTTTCCTGTTGAAGTCTTGTGCAAAAGTTGGAGCTACCCAAGAAGGGAAACAGATCCATGGCCATGTTTTGAAGCTTGGACTTGATTCTCTTCGAGATGCGGTTTCTTTTACTGCCCTGATCACGGGTTATACTTTGCGGGGTTGTTTGGATGATGCAAGACGGCTTTTTGAAGAAATTCCAGTGAGAGATGCAGTGTCTTGGAATGCTATGATTGCTGGGTATGCCCAAAGTGGTCGATTTGAAGAGGCATTGGCGGATTTGTTTGAGGGGATATGTGAAAAGGATATAATCTCCTGGAATGTTATGATAGGTGGACTAGCTATGCATGGGCATGCAAATATGGCCCTTGAGCTTTTCAGACAAATGAGAGATGAAGGATTCGAACCAGATGATATCACTTTTGTTGGTGTTTTATCAGCTTGCAGCCATGCTGGTTTGGTAGAACTCGGTCGTCAATGTTTTAGCTCAATGGTTGAAGATTATGACATTTCACCAAAACTGCAACACTATGGCTGTATGATAGATCTACTAGGCCGAGCAGGGCTATTTGATGAAGCAGAAGCCCTGATGAAGAACATGGAGATGAAGCCAGATGGTGCTATATGGGGTTCTCTACTTGGAGCTTGCAGGGTCCATGGAAATGTAGAGTTGGGGGAATTTGCTGCTAAACACCTTTTTGAATTAGAGCCTGAAAACCCTGGGGCGTATGTGCTTTTATCAAACATTTATGCAACCGCTGGTAGATGGGATGATGTAGCAAGAATAAGAACCAAGCTGAACGATAAGGGGATGAAGAAGGTCCCTGGATGTAGCTCAATTGAGGTGGATAGTGTTGTTCACGAGTTTCTTGTTGGTGACAAAAAAATGAAAGAAACTGGTCTGATGCCTAACATATCCATAACCCAACAATGTGAAATATGA 1023 43.3 MIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLDSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALADLFEGICEKDIISWNVMIGGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKKMKETGLMPNISITQQCEI* 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 590868 593407 + Vvi1g55 Vvi1g55 769255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g55 340 Gene3D Tetratricopeptide repeat domain 122 335 IPR011990 GO:0005515
Vvi1g55 340 Gene3D Tetratricopeptide repeat domain 55 121 IPR011990 GO:0005515
Vvi1g55 340 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 120 320 - -
Vvi1g55 340 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 139 - -
Vvi1g55 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Vvi1g55 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 66 96 IPR002885 -
Vvi1g55 340 Pfam E motif 246 308 IPR046848 -
Vvi1g55 340 PANTHER OS07G0662700 PROTEIN 1 139 - -
Vvi1g55 340 PANTHER OS07G0662700 PROTEIN 120 320 - -
Vvi1g55 340 Pfam PPR repeat family 128 176 IPR002885 -
Vvi1g55 340 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 128 IPR002885 -
Vvi1g55 340 SUPERFAMILY TPR-like 80 285 IPR011990 GO:0005515
Vvi1g55 340 Pfam PPR repeat 99 118 IPR002885 -
Vvi1g55 340 Pfam PPR repeat 204 229 IPR002885 -
Vvi1g55 340 Pfam PPR repeat 68 93 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 204 228 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 99 118 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 131 164 IPR002885 -
Vvi1g55 340 TIGRFAM PPR: pentatricopeptide repeat domain 68 93 IPR002885 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g55 - - vvi:100256055 422.165