Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g550 ATGCTGGCGCTCGGGAGTCCTACCAGTGTTCGTACGAGCACTACCTGTGGTGCTTTGCTCAGAGAACTTGAGCAAATATGGAATGACATTGGGGAGAGCGAAGCAGAAAAAGACCGGATGTTGCTGGAGCTAGAGAGGGAGTGCTTAGAAGTCTATCGGAGAAAGGTGAGTGAGGCTGGCAATACCAAGGCACGACTTCATCAGTCTGTTATGGCAAAGGAAGCGGAGCTTGCAGCACTAATGGCTGCTCTTGGAGAACTTGGTTTTCATTCACAGACTCATATGGAGAAAAGGTCAACTTCATTGAAAGAGCAACTTGCATCAGTCACACCACTGGTAGAAGATCTAAGATCGAAGAAAGAGGAACGGTTGAAGCAGTTTGCTGATATTAGGGCACAAATTGAAAAGATCAGTGGTGAGATTTCAGGATACAATCATCACACTAATACCATGATTGGTTGCTTGACTCTGGAGGAACAAGATTTGTCATTAAGAAATCTTAATGAATGTCAGACACATCTTCGGACTCTTCAAAAGGAGAAGTCTGAACGCCTTAATAAAGTTCTGGAATATGTGAATGAAGTGCATACTCTATGTGGTGTGCTTGGGCTAGATTTTGGCCAGACTGTGAGTGATGTGCATCCAAGCTTGCATGGAACAAGCCTGGAGCAATCCACAAACATCAGCAATAGCACATTGGAAGGTCTAGAACATGCCATCCTTAAGTTGAAAACAGAAAGAAAAGGTCGAATTCTGAAGCTAAAAAATATTGGAGCATCCCTATTGGAACTTTGGAAGTTGATGGACACACCGAAAGAAGATAAGAGTGATTTTCTAAGAATTACTTCGTTCCTTGGAACATCAGAATTAGAAGTTACAGAACCAGATGTCCTCTCGACGGAGATGATTGAGCAGGCCTCAGCAGAAGTGGAGAGGCTCGGTAAGCTAAAAGCTAGCAGAATGAAAGAACTTGTCATGAAAAAGAGGGCAGAATTGGAGGAGATATGCAGAATTGCTCATATTGAACCGGATACAAACACAGCTGCTGAGAAATCTAATGCATTGATTGATTCAGGTCTTGTGGATCCTTCTGAACTTCTAGCAAACATTGAAGCACAGATAACAAAAGTAAAAGAAGAAGCTGTGAATCGAAAAGAAATTATGGACAGGATAGACCGATGGCTTTCAGCATGTGAAGAGGAGAATTGGCTTGAAGATTATAATCGAGATGAGAATCGGTACAGCGCTGGTAGAGGTGCTCACATAAACCTTAAACGTGCAGAGCGAGCTCGAGTAACCATAAGCAAGATTCCAGCAATCGTTGACAATCTGATAAGCAGAACACTTGCCTGGGAAAAGGAGAAAAGGATGTCATTTCTTTATGATGGGGTTAGTTTGGTGAGAATACTGGAGGATTACAAAGAAGCCAGACGACAGAAAGAAGAAGAGAAGAAAAGATACCGGGACCAGAAGAAGCTCCAAGATCTGCTCCTCACTGAGAAGGAAGCCATGTATGGGTCTAAACCTAGCCCGAAAAGAACCAATAGCTTTAGGAAGCCAAATGGTTATCGTGCAAATGGAAATGGATCCATGACACCTACACCTCGTCGGAACTCTGTTGGTGGTGCAACTCCTGAGCTCCTCACACCCCGTTCGTACTCTGGGCGCCAAAATGGATATTTCAAGGAAATGAGAAGGTTGTCTACTGCACCACTGAACTTTGTGGCCATATCAAAAGAAGATACAATGTCATATGCATCTATTTGTGGTTCTGAGCTAGGCTCACCTCCTCGGAGATAA 1800 43.5 MLALGSPTSVRTSTTCGALLRELEQIWNDIGESEAEKDRMLLELERECLEVYRRKVSEAGNTKARLHQSVMAKEAELAALMAALGELGFHSQTHMEKRSTSLKEQLASVTPLVEDLRSKKEERLKQFADIRAQIEKISGEISGYNHHTNTMIGCLTLEEQDLSLRNLNECQTHLRTLQKEKSERLNKVLEYVNEVHTLCGVLGLDFGQTVSDVHPSLHGTSLEQSTNISNSTLEGLEHAILKLKTERKGRILKLKNIGASLLELWKLMDTPKEDKSDFLRITSFLGTSELEVTEPDVLSTEMIEQASAEVERLGKLKASRMKELVMKKRAELEEICRIAHIEPDTNTAAEKSNALIDSGLVDPSELLANIEAQITKVKEEAVNRKEIMDRIDRWLSACEEENWLEDYNRDENRYSAGRGAHINLKRAERARVTISKIPAIVDNLISRTLAWEKEKRMSFLYDGVSLVRILEDYKEARRQKEEEKKRYRDQKKLQDLLLTEKEAMYGSKPSPKRTNSFRKPNGYRANGNGSMTPTPRRNSVGGATPELLTPRSYSGRQNGYFKEMRRLSTAPLNFVAISKEDTMSYASICGSELGSPPRR* 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6129833 6135868 + Vvi1g550 Vvi1g550 769750

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g550 599 MobiDBLite consensus disorder prediction 509 539 - -
Vvi1g550 599 PANTHER PROTEIN REGULATOR OF CYTOKINESIS 1 PRC1-RELATED 9 597 IPR007145 GO:0000226|GO:0008017
Vvi1g550 599 MobiDBLite consensus disorder prediction 501 555 - -
Vvi1g550 599 PANTHER 65-KDA MICROTUBULE-ASSOCIATED PROTEIN 6 9 597 - -
Vvi1g550 599 Coils Coil 466 493 - -
Vvi1g550 599 Gene3D - 373 507 - -
Vvi1g550 599 Pfam Microtubule associated protein (MAP65/ASE1 family) 19 514 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g550 K16732 PRC1, ASE1, MAP65; Ase1/PRC1/MAP65 family protein - vvi:100264632 1136.71
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g550 . Blo16g01197 . . . . . . . . . . . . . . Cpe01g01863 . . . . . . . . . . . . . . . . Cone6ag0334 Cone9ag0370 . . . . . . . . . . . Bma06g00578 . Cmo04g02243 Cmo15g00917 Cma04g02150 Cma05g00061 Car04g02084 Car05g00051 Cpe13g00434 . Bhi12g00978 . . . Hepe02g2591 . Lcy10g1585 Cla01g00662 Cam01g0693 Cec01g0685 Cco01g0713 Clacu01g0681 Cmu01g0656 Cre09g1850 Lsi09g00716 Csa05g01289 . Cme09g01291
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007189 1 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 37