Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g554 ATGCCCAACGCAATGAGAAAAAGAAAATGGAAAAGTTCTCTAATGGATGATGATGGGGGATTGAACATGCGCAATTGGGGATATTACGAACCGGCCTTTAAAGGGCATCTCAATCTGCAGCTCATGTCATCCGTGGCAGAGCGTGACACTAAACCCTTTTTACCTGGCCGGGATTCTCCCTTGATGGTTAGTGCCAATGGAGCCTTTCACCCAAGGGATTGCATGGTTTCTGAAGCACCAGTACACATGGACTATGTGAGAGACAGTTGGATAAACCAGAGGGATAAGTTCCTAAATATATTACCTGGAAACTCAAATTTTCAGAGGGTTGGCAGGATGGAAGATTCAGACCTTAAAAAGGAAGGCGGCCCTTTGAAGAAAAGGACAGGTGGTGGAGCCCCTAAAACCCCAAAAATTAGGAAGACTAAGAAGGGGCCTTCTGTGCCAAAGGATGGTACTAACTCTTCTGTTCAACGTGTGAAACCAGCGAAGAAAAATATGGATGTTGTCATAAATGGGATTGATATGGACATTTCTGGTATTCCTATACCTGTTTGCTCATGCACAGGAAACCCACAGCAATGTTATCGTTGGGGATGTGGTGGTTGGCAATCAGCTTGTTGTACCACAAGTATATCAATGTATCCGTTGCCTATGAGCACCAAACGGCGTGGCGCAAGGATAGCTGGACGGAAAATGAGTCAAGGTGCGTTCAAGAAGGTGTTGGAGAAACTTGCAGCTGAAGGTTACAATTTTGCCAACCCAATAGATTTGAGGCGTCACTGGGCAAAACATGGTACCAACAAGTTCGTAACAATCAGGTGTTTCAAGAAGCCCAAAGCGGCAACAGATCCTGAGATCCATCCCCCCACCCCACCTCTGTTCGTCTCCTTCTCTCTGTCTGCCTCACTTCAATACAGTGAATAA 927 45.85 MPNAMRKRKWKSSLMDDDGGLNMRNWGYYEPAFKGHLNLQLMSSVAERDTKPFLPGRDSPLMVSANGAFHPRDCMVSEAPVHMDYVRDSWINQRDKFLNILPGNSNFQRVGRMEDSDLKKEGGPLKKRTGGGAPKTPKIRKTKKGPSVPKDGTNSSVQRVKPAKKNMDVVINGIDMDISGIPIPVCSCTGNPQQCYRWGCGGWQSACCTTSISMYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLRRHWAKHGTNKFVTIRCFKKPKAATDPEIHPPTPPLFVSFSLSASLQYSE* 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6173132 6176111 - Vvi1g554 Vvi1g554 769754

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g554 308 PANTHER - 113 274 IPR010409 -
Vvi1g554 308 PANTHER - 15 109 IPR010409 -
Vvi1g554 308 SMART GAGA_bind_2 15 274 IPR010409 -
Vvi1g554 308 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 113 274 - -
Vvi1g554 308 PANTHER PROTEIN BASIC PENTACYSTEINE2-LIKE 15 109 - -
Vvi1g554 308 MobiDBLite consensus disorder prediction 113 161 - -
Vvi1g554 308 Pfam GAGA binding protein-like family 110 274 IPR010409 -
Vvi1g554 308 Pfam GAGA binding protein-like family 15 109 IPR010409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g554 - - - vvi:100233138 532.717
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g554 . . . . . . . . . . . . . . . . Cpe01g01864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo04g02245 Cmo15g00916 Cma04g02151 Cma15g00880 Car04g02085 Car15g00827 Cpe13g00435 . Bhi12g00980 . . . Hepe02g2589 . . Cla01g00663 Cam01g0694 Cec01g0686 Cco01g0714 Clacu01g0682 Cmu01g0657 Cre09g1849 Lsi09g00717 Csa05g01290 . Cme09g01290
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Vvi1g554 . 15 274 BBR/BPC Transcription factor family AT2G01930 55.6 5.1e-81 298.1
Vvi1g554 . 141 274 BBR/BPC Transcription factor family AT2G35550 59.0 1.3e-42 170.2
Vvi18g1061 ECH 32 147 BBR/BPC Transcription factor family AT2G35550 59.5 7.3e-38 154.5
Vvi3g55 ECH 135 249 BBR/BPC Transcription factor family AT2G35550 57.4 2.8e-37 152.5
Vvi1g554 . 15 274 BBR/BPC Transcription factor family AT1G68120 51.1 9.1e-72 267.3
Vvi18g1061 ECH 40 147 BBR/BPC Transcription factor family AT1G68120 57.4 9.6e-37 151.0
Vvi3g55 ECH 1 249 BBR/BPC Transcription factor family AT2G21240 65.3 2.9e-79 292.4
Vvi18g1061 ECH 5 147 BBR/BPC Transcription factor family AT2G21240 70.6 2.2e-58 223.0
Vvi3g55 ECH 1 249 BBR/BPC Transcription factor family AT4G38910 64.1 2.8e-71 265.8
Vvi18g1061 ECH 6 147 BBR/BPC Transcription factor family AT4G38910 68.3 2.6e-53 206.1
Vvi18g1061 ECH 2 147 BBR/BPC Transcription factor family AT5G42520 74.2 4.0e-62 235.3
Vvi3g55 ECH 135 249 BBR/BPC Transcription factor family AT5G42520 80.3 6.5e-52 201.4
Vvi1g554 . 141 274 BBR/BPC Transcription factor family AT2G35550 59.0 1.3e-42 170.2
Vvi18g1061 ECH 32 147 BBR/BPC Transcription factor family AT2G35550 59.5 7.3e-38 154.5
Vvi3g55 ECH 135 249 BBR/BPC Transcription factor family AT2G35550 57.4 2.8e-37 152.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002345 4 2 3 4 4 1 2 1 1 0 1 1 3 2 2 4 1 2 2 1 2 2 2 2 1 1 2 5 3 1 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14518 PF06217 GAGA_bind 1.70E-85 No_clan Vvi TF