Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g555 ATGTCGCAGTTGGACCTAACTGGCTGCAAGAAAAGGAAGAGAGGAGACAGGGTTTTTAGATTCAAGACCTTTGGAGAAAAAGGCTACCCTGCTGAGTTCAAAGGCTCCTTCCGTGAAAATGTGGCGGCCCTCCTTGAATTTGGGCATATAGAGAGTAACATGAGTTGTGGAATGCTATGCTGGTCGTTTCAGCTCGAGCTTCATAGCCACCCTCCTGCCCATATCTTGCTGTTTGTGGTTGAAGAGCCCATTGGAGCATCCACCCACCGTCACTGCAACCACTGCAAATATGTCGGCTGGGGGCACCATATGATATGCAATAGGAAGTATCACTTTGTAGTGCCTTCCAGGGAAACAGAGGCAGTGTTTGGCCATGACAGCAACTATGAAGGGCCTGATTCGAGGAAGGGTGAGAGGAGCATAGTGGGAGTTGAGGGGCATGCGATGCATGGAGTCATTCACTCCAATGGCTTCGGCCATTTGCTGTGTGTGAATGGGCTAGAAATGGGCTCAGACTTGGCTGGGCGACACATCATGGATTTTTGGGACCGTTTGTGCACCAGTCTGAGGGCAAGGAAAGTGAGTATATATGACATTTCACAGAAGAAAGGCATGGATTTGAGGCTACTCCATGGAGTAGCTTACAGTAAGCCCTGGTTTGGTCGCTGGGGATATGGCTTTGGGCGTGGAAGCTTTGGTGTTACTCAACCAATGTACCAGAAGGCCATAGATGCTATACAAGGCATGCCATTGTGCTTACTCATCCATCATCTTGGCAGTTCTAACCATGACATTCCACTCATCTTCTCAAGGTATCAAACATTATCGGATCATTCACTGGTGACAGTTGGCAATCTCTTTCATTTCATGTTAGAGCTTAAATCCCGCCTTCCAAAGGAAACTTGTCTTGATTCATATAATCCAGGAATCTCAGTGGAAACTACTTGTAGATGGTCTCCAAAGCGAGTTGAAATGGCAGCAAGGGTGATTGTTGAAGCATTAAGGAGGGCTGAATTTAGGTGGGTCTCAAGGCAAGAGGTTCGTGATGCTGCTCGGGCCTACATTGGTGACACTGGCTTGCTGGATTTTGTGCTGAAATCCCTGGGAAACCACATAGTTGGGAATTACTTGGTTCGACGCAGCTTAAACCCAGTGACAAAAGTTCTGGAGTATTGCTTAGAAGACATCTCCACTGTATTTCCCAGTGATGAAGGTTTGGCCATGAATGATTCGAAACTGAAGGCTCGCTACAAGATCACGAGGATTCAACTAATGAAAGACATGTTCTACTTGTACAAAAACATCCTAAAAGAGCAAAAGCAGACGGTTGCCACAGGGATATTTAGTACAATACCTGTAGCTGCACGGGTAATTCTTGACACCAAATATCTAATCAAAGAATATTGTGGGGGGCAACCTTCAGAAGTCAAAGTGGGCTTGAAGCTCTATTGTACAGTTGTATCACGAAACAATGATGAGGATGATGATGGAATAGAAAAGGCACTTCCACCATTTGAGTGTATCATCTTCAAAGATAATTCTACCGTCAATGAGCTTAAGCTAGAAGTTGAAAGGAACTTTAGAGAGATTTATTGGGGATTGAGAAGCTTCTGTGTGGAGTCAATAGTGAATTTGAATGCCAAGGGATCAGATTTGGTTTTTGGGCTAGTTGAAGCAGGCAGTGAACTTCTCTTTGAAGGTAATGACAGCAAGGTTGGAATCAACAATGAGGGGATATATGAGAGTGGTCATAATAACTGCACTGTGGATTGTCCTTGTGGAGCTAAAGATGATGATGGTGAACGAATGATATCATGTGATATTTGTGAAGTTTGGCAGCATACACGGTGTGCTCAGATTCCAAATAATGAAGAAATTCCACATATATTTCTCTGCAATCAGTGTGAGCAAGAAATCATACTATTTCCTTCTCTACCATAG 1941 44.41 MSQLDLTGCKKRKRGDRVFRFKTFGEKGYPAEFKGSFRENVAALLEFGHIESNMSCGMLCWSFQLELHSHPPAHILLFVVEEPIGASTHRHCNHCKYVGWGHHMICNRKYHFVVPSRETEAVFGHDSNYEGPDSRKGERSIVGVEGHAMHGVIHSNGFGHLLCVNGLEMGSDLAGRHIMDFWDRLCTSLRARKVSIYDISQKKGMDLRLLHGVAYSKPWFGRWGYGFGRGSFGVTQPMYQKAIDAIQGMPLCLLIHHLGSSNHDIPLIFSRYQTLSDHSLVTVGNLFHFMLELKSRLPKETCLDSYNPGISVETTCRWSPKRVEMAARVIVEALRRAEFRWVSRQEVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISTVFPSDEGLAMNDSKLKARYKITRIQLMKDMFYLYKNILKEQKQTVATGIFSTIPVAARVILDTKYLIKEYCGGQPSEVKVGLKLYCTVVSRNNDEDDDGIEKALPPFECIIFKDNSTVNELKLEVERNFREIYWGLRSFCVESIVNLNAKGSDLVFGLVEAGSELLFEGNDSKVGINNEGIYESGHNNCTVDCPCGAKDDDGERMISCDICEVWQHTRCAQIPNNEEIPHIFLCNQCEQEIILFPSLP* 647
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6187967 6190575 + Vvi1g555 Vvi1g555 769755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g555 646 SUPERFAMILY FYVE/PHD zinc finger 583 638 IPR011011 -
Vvi1g555 646 CDD PHD_MMD1_like 590 635 - -
Vvi1g555 646 ProSitePatterns Zinc finger PHD-type signature. 591 635 IPR019786 -
Vvi1g555 646 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 646 - -
Vvi1g555 646 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 576 639 IPR013083 -
Vvi1g555 646 Pfam PHD-finger 591 637 IPR019787 -
Vvi1g555 646 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 646 - -
Vvi1g555 646 SMART PHD_3 590 636 IPR001965 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14519 PF00628 PHD 2.00E-08 CL0390 Vvi TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g555 - - vvi:100244077 1323.15