Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g556 ATGTTGGAAAACACTGCTGCTGCCTCCACTGCCCCATCTTCTTCTTCCGATGCATTTACTTCCTTAGAGAATGGTGTTTGTAATAAAAGGAAAAGGAGACCGGCTGGGACTCCAGATCCAGATGCGGAGGTTGTGTCTCTCTCCCCCAAGACCTTACTGGAATCGGACCGGTATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGAGACCAGAACCTTCAGATGCACCGGCGACGGCACAAGGTGCCCTGGAAATTGTTGAAGAGGGAGACACAGGAGGTTAAGAAGCGGGTGTTCGTGTGCCCGGAGCCTAGCTGCTTGCACCATGACCCCTTACACGCTCTTGGCGATCTGGTCGGCATCAAAAAACATTTCAGACGGAAGCACAGCAATCACAAACAGTGGGTCTGTGAGAAGTGCTCCAAAGGCTATGCTGTTCAATCTGATTACAAGGCGCACCTCAAGACCTGTGGTACCAGAGGCCACTCCTGCGACTGCGGCCGTGTTTTTTCCAGAGTAGAGAGTTTCATCGAGCACCAAGACGCTTGCGCTGTCCGACAAGTCCGGCCTGAATTACAAACATTGCAGCCGGCCTGCTCGTCTAGAACGGCTTCGAGCACCAGCCCCTCCAGCGATAACAATTTCAGTAGAGTCCAGTTGCCAGGACTCACACTGCCAAAACCAGCTGAAACCGTCTTCTTATGCTTGGAGCGGAATAATCCTTCTCCTTCTGATCTGCAGCACAATCTTGAGCTTCGGCTCCTACCATCCCCGAACACGAGCTCTCCAAGGGAAATGAATACTGCAGAACCAGCATTGGCGGCGTCAAGGTTGAAGGAACTGGCTAGTGAGCAGCTAAAGTTGGCTATGGCCGAAAAGGCCTCTGCTGAAGAGGCCAGACGAGAAGCAAAGCGGCAAATTGAATTAGCGGAGCTGGAGTTTGCCAATGCGAGGAGAATCAGGCAACAGGCACAAGCCGAACTGGAAAAGGCCCAGATTTTGAAAGAGCAGGCTATAAAGAAAGTGAGCTCCACCATTCTGCAAATCACTTGTCATGCTTGCAAGCACCAGTTCCAAGCAACAGCAGCCGGAGCACCGTCGGATGAGACTTCACTGGCTATGAGTTACATGTCTTCAGCCCTAACAGAAGGGGAAGGAGAGTAA 1164 51.8 MLENTAAASTAPSSSSDAFTSLENGVCNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQEVKKRVFVCPEPSCLHHDPLHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACAVRQVRPELQTLQPACSSRTASSTSPSSDNNFSRVQLPGLTLPKPAETVFLCLERNNPSPSDLQHNLELRLLPSPNTSSPREMNTAEPALAASRLKELASEQLKLAMAEKASAEEARREAKRQIELAELEFANARRIRQQAQAELEKAQILKEQAIKKVSSTILQITCHACKHQFQATAAGAPSDETSLAMSYMSSALTEGEGE* 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6214540 6217236 + Vvi1g556 Vvi1g556 769756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g556 387 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Vvi1g556 387 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 263 387 - -
Vvi1g556 387 PANTHER ZINC FINGER PROTEIN SHOOT GRAVITROPISM 5 1 262 - -
Vvi1g556 387 Coils Coil 279 341 - -
Vvi1g556 387 MobiDBLite consensus disorder prediction 1 23 - -
Vvi1g556 387 SMART c2h2final6 58 80 IPR013087 -
Vvi1g556 387 SMART c2h2final6 135 162 IPR013087 -
Vvi1g556 387 SMART c2h2final6 99 129 IPR013087 -
Vvi1g556 387 MobiDBLite consensus disorder prediction 1 45 - -
Vvi1g556 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Vvi1g556 387 Gene3D Classic Zinc Finger 120 197 - -
Vvi1g556 387 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Vvi1g556 387 Gene3D Classic Zinc Finger 36 101 - -
Vvi1g556 387 MobiDBLite consensus disorder prediction 196 217 - -
Vvi1g556 387 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Vvi1g556 387 PANTHER OS03G0310200 PROTEIN 1 262 IPR039288 GO:0009630
Vvi1g556 387 PANTHER OS03G0310200 PROTEIN 263 387 IPR039288 GO:0009630
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14520 PF00096 zf-C2H2 0.0035 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g556 K25871 - vvi:100262958 706.827