Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g557 ATGGAGAGCAACCCCTTTCAGCTTTTCTTTCATCGTGTTCTGAAGCTGCTGCTGCTGCTCTGTGCGTTGGTTTCTGGGATTGAGCTACGAGGGGTGTCCGGGTCGACGAAGACGGATGGGGAGGCACTTCTTGCGTTCAAGAAGATGGTTCACAAGGACCCGCATGGAGTTTTGGAGGGGTGGCAGGCCAATAAGAGTCCATGCACCTGGTATGGGGTTTCCTGCTCTCTGGGACGTGTCACTCAGCTTGATCTCAACGGGTCTAAACTCGAGGGAACTCTCTCTTTCTACCCCTTGGCTTCTTTAGATATGTTGTCTCTCGACCTGTCGTCAGCCGGGCTGGTTGGTTTAGTTCCTGAAAATCTTTTCTCCAAGCTTCCGAATCTTGTTTCCGCCACTCTTGCTTTAAACAATTTAACGGGGTCTCTCCCTGATGATCTCTTATTGAATTCCGATAAGCTGCAGGTTCTGGACCTCTCTTATAACAATCTAACGGGTTCCATCTCGGGCCTGAAAATTGAGAATTCTTGCACTTCCTTGGTGGTGTTGGATCTGTCGGGAAACAATCTAATGGATTCACTTCCATCCTCGATTTCCAACTGCACCAGTCTCAACACTTTGAATTTGTCCTACAATAACTTGACGGGAGAGATCCCGCCATCTTTCGGCGGCCTCAAAAACCTACAAAGATTGGATCTCTCCCGCAATCGTCTCACTGGTTGGATGCCTTCCGAGTTGGGAAATACGTGTGGGTCACTCCAAGAAATCGACCTTTCCAATAACAACATTACGGGTCTCATTCCAGCGTCTTTCTCCTCTTGCTCTTGGCTGCGACTTCTTAATTTGGCCAACAACAATATTTCCGGTCCCTTCCCAGATTCCATCCTCCAGAGCCTTGCCTCATTGGAGACCTTGTTGTTGAGCTACAATAACATCTCCGGAGCATTTCCTGCTTCCATTTCATCTTGCCAAAACCTAAAGGTCGTGGATTTCAGTTCTAATAAGCTTTCTGGCTTCATCCCACCAGATATATGTCCAGGTGCTGCTTCACTAGAAGAGCTGAGAATCCCGGACAATTTGATCAGTGGAGAAATTCCAGCTGAATTGTCACAGTGTTCAAGGCTGAAGACTATTGATTTCAGCTTAAACTACCTGAAAGGCCCAATTCCACCACAGATTGGGAGGCTTGAGAATCTTGAGCAGCTAATAGCTTGGTTCAATGCCTTGGATGGAGAAATCCCACCAGAGTTGGGAAAATGCAGGAACCTTAAGGATCTTATCCTTAACAATAACAACCTTGGTGGTAAAATCCCATCTGAATTGTTCAATTGCGGTAATCTGGAATGGATTTCTCTCACAAGCAATGGACTCACTGGCCAAATTCCACCAGAATTCGGCCTTTTGAGTAGACTGGCGGTTCTGCAGCTTGGCAACAACAGCTTGAGTGGTCAGATACCAAGAGAGCTAGCAAATTGCAGCAGCTTGGTATGGTTGGACTTGAATAGCAACAGACTTACCGGGGAAATCCCGCCTCGACTTGGCAGGCAGCTTGGGGCAAAATCATTAAGTGGAATTCTCTCTGGAAACACCCTGGCATTTACTTGTGATTTTACAAGAATGTATTCTGGTGCAGTCCTAAGCCTCTTTACAAAGTACCAGACTTTAGAGTATCTCGATCTCTCCTACAACGAGCTTCGGGGAAAAATACCAGATGAAATTGGGGGAATGGTGGCTCTACAAGTTCTTGAATTGAGCCACAACCAGCTGTCTGGAGAGATCCCCTCATCACTTGGGCAGCTCAGAAACTTAGGTGTATTTGATGCATCACATAACAGATTGCAAGGTCATATCCCAGACTCATTCTCAAATCTCTCTTTCTTAGTCCAAATAGATCTATCCTATAATGAATTAACAGGGCAAATTCCAACAAGGGGGCAACTTAGCACACTTCCTGCAAGCCAGTATGCAAACAACCCAGGGCTCTGTGGAGTTCCATTGCCTGAATGCCAAAATGATGACAATCAACCAGTAACACCACTGAGCATTAATGTGGCGACTTTTCAGAGGCAGCTAAGGAAACTCAGGTTCTCACAACTCATTGAGGCTACCAATGGCTTCTCAGCAGCAAGTCTTATTGGGTGTGGTGGGTTCGGGGAAGTGTTCAAGGCAACATTGAAAGATGGGTCAAGCGTGGCAATCAAGAAACTCATAAGATTGAGTTGCCAAGGAGACCGAGAATTTATGGCTGAGATGGAAACTCTGGGGAAGATCAAGCATAGGAATCTGGTTCCTCTGTTGGGCTACTGCAAGGTTGGAGAAGAGAGACTCCTTGTCTATGAATTCATGGAGTATGGAAGCTTAGAAGAAATGCTACATGGAAAGGCAAAGGCACGAGATCGACGTATTCTAACATGGGAGGAAAGGAAAAAAATTGCAAGAGGCGCAGCTAAAGGACTCTGTTTCTTACACCACAATTGCACACCTGGGTATGTGCCTCCAGAATACTATCAAAGCTTCCGCTGCACGGCTAAAGGAGATGTCTATTCTTTTGGAGTTGTTCTCTTGGAACTCTTGACGGGGAAGCGACCCACTGATAAGGAGGATTTTGGAGACACCAACTTGGTGGGGTGGGTGAAAATGAAAGTGAAAGAAGGAAAAGGAATGGAAGTAATAGACCCAGAGCTGCTTTCAGTCACCAAAGGAACTGATGAAGCCGAAGCTGAAGAGGTTAATGAGATGGTGAGGTACCTAGACATAACAATGCAGTGCGTGGAAGACTTCCCCTCCAAGAGGCCTAATATGTTGCAGGCGGTAGCCATGTTGAGGGAGCTGATACCTGGATCTTCCAATGCAAGCAATAGTGGCAAATTTATAAGCACTGGTATTTTCGGTTACAGGAAAAGGAAAATAATTCCACAGGCTACGGGCCTGTTTGGGAAATGA 2943 46.25 MESNPFQLFFHRVLKLLLLLCALVSGIELRGVSGSTKTDGEALLAFKKMVHKDPHGVLEGWQANKSPCTWYGVSCSLGRVTQLDLNGSKLEGTLSFYPLASLDMLSLDLSSAGLVGLVPENLFSKLPNLVSATLALNNLTGSLPDDLLLNSDKLQVLDLSYNNLTGSISGLKIENSCTSLVVLDLSGNNLMDSLPSSISNCTSLNTLNLSYNNLTGEIPPSFGGLKNLQRLDLSRNRLTGWMPSELGNTCGSLQEIDLSNNNITGLIPASFSSCSWLRLLNLANNNISGPFPDSILQSLASLETLLLSYNNISGAFPASISSCQNLKVVDFSSNKLSGFIPPDICPGAASLEELRIPDNLISGEIPAELSQCSRLKTIDFSLNYLKGPIPPQIGRLENLEQLIAWFNALDGEIPPELGKCRNLKDLILNNNNLGGKIPSELFNCGNLEWISLTSNGLTGQIPPEFGLLSRLAVLQLGNNSLSGQIPRELANCSSLVWLDLNSNRLTGEIPPRLGRQLGAKSLSGILSGNTLAFTCDFTRMYSGAVLSLFTKYQTLEYLDLSYNELRGKIPDEIGGMVALQVLELSHNQLSGEIPSSLGQLRNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSYNELTGQIPTRGQLSTLPASQYANNPGLCGVPLPECQNDDNQPVTPLSINVATFQRQLRKLRFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEFMEYGSLEEMLHGKAKARDRRILTWEERKKIARGAAKGLCFLHHNCTPGYVPPEYYQSFRCTAKGDVYSFGVVLLELLTGKRPTDKEDFGDTNLVGWVKMKVKEGKGMEVIDPELLSVTKGTDEAEAEEVNEMVRYLDITMQCVEDFPSKRPNMLQAVAMLRELIPGSSNASNSGKFISTGIFGYRKRKIIPQATGLFGK* 981
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6226979 6230660 - Vvi1g557 Vvi1g557 769757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g557 980 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Vvi1g557 980 PRINTS Leucine-rich repeat signature 154 167 - -
Vvi1g557 980 PRINTS Leucine-rich repeat signature 225 238 - -
Vvi1g557 980 Gene3D Transferase(Phosphotransferase) domain 1 828 957 - -
Vvi1g557 980 SUPERFAMILY L domain-like 61 293 - -
Vvi1g557 980 SUPERFAMILY Protein kinase-like (PK-like) 687 941 IPR011009 -
Vvi1g557 980 Pfam Protein tyrosine and serine/threonine kinase 710 825 IPR001245 GO:0004672|GO:0006468
Vvi1g557 980 Pfam Protein tyrosine and serine/threonine kinase 829 939 IPR001245 GO:0004672|GO:0006468
Vvi1g557 980 ProSitePatterns Protein kinases ATP-binding region signature. 712 735 IPR017441 GO:0005524
Vvi1g557 980 SUPERFAMILY L domain-like 546 665 - -
Vvi1g557 980 Gene3D Ribonuclease Inhibitor 172 247 IPR032675 -
Vvi1g557 980 Gene3D Ribonuclease Inhibitor 248 674 IPR032675 -
Vvi1g557 980 SMART LRR_typ_2 177 201 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 225 248 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 202 224 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 576 600 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 299 323 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 421 444 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 250 273 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 468 492 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 396 420 IPR003591 -
Vvi1g557 980 SMART LRR_typ_2 493 516 IPR003591 -
Vvi1g557 980 ProSiteProfiles Leucine-rich repeat profile. 252 273 IPR001611 GO:0005515
Vvi1g557 980 Gene3D Ribonuclease Inhibitor 35 171 IPR032675 -
Vvi1g557 980 Gene3D Transferase(Phosphotransferase) domain 1 782 827 - -
Vvi1g557 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 827 952 - -
Vvi1g557 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 528 - -
Vvi1g557 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 539 674 - -
Vvi1g557 980 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 678 828 - -
Vvi1g557 980 SUPERFAMILY RNI-like 218 515 - -
Vvi1g557 980 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vvi1g557 980 Pfam Leucine rich repeat 548 589 IPR001611 GO:0005515
Vvi1g557 980 Pfam Leucine rich repeat 179 238 IPR001611 GO:0005515
Vvi1g557 980 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Vvi1g557 980 Pfam Leucine rich repeat 252 312 IPR001611 GO:0005515
Vvi1g557 980 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 2 827 952 - -
Vvi1g557 980 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 2 6 528 - -
Vvi1g557 980 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 2 678 828 - -
Vvi1g557 980 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 2 539 674 - -
Vvi1g557 980 Gene3D Phosphorylase Kinase; domain 1 675 781 - -
Vvi1g557 980 ProSiteProfiles Protein kinase domain profile. 706 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76511 PF07714 PK_Tyr_Ser-Thr 2.30E-06 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g557 - - vvi:100261207 1262.67