Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g558 ATGTTGATAGTGAATAATCCCAATGATAATAGTTTGTTATCGACATTGGAATTAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACAGTCTGAAAGTAGATCAAAGAAAATGGCTGATATTGCCGGCAAGCCGGTGGGCTCAGGCCATGCTAGAATTCCACTCTTGGGTTTTGGAACTGCTGTATTTCCTTTCACTGCATCAGAAACCATGAAAGAATCCATTCTCCATGCCATCAAACTGGGCTACAGACACATCGACGCCGCTGCTATTTACAACTCGGAGCCTCCCGTGGGTGAAGCGATTGCGGAAGCTTTAGGCCTTGGCCTGATCAAATCAAGGGCGGAGCTATTCATCACGTCAAAGCTTTGGTGCACCGACGCACACCCTGACCTAGTCCTCCCTGCACTACGCAGAACTCTCAAGAATCTTGGGTTGGAATACCTTGATCTGTACCTCATACATTTCCCGGTGAGCTTGAAGCCTGGGAGTTGTGAGGTGCCCTTTGAAGAGAAGGATCTTCTTCCTCTGGATTTCAAGTCTGTTTGGGAAGCCATGGAGGAGTGTCAAAGCCTCGGTCTATCAAAATTGATAGGAGTAAGCAACTTTTCTTGCAAGAAGCTGCAGGACCTGCTGGTCACTGCAAAGATTTCACCCGCTGTCAATCAAGTGGAGATGAATCCACTATGGCAGCAGAAGAAGCTGAGGGAGTTCTGTAATGGCAAGGGCATCCATGTCACAGCCTACTCCCCATTAGGTGGCAGAGGAACTCTTTGGGGAACTAACCGAGTCCTTGACTGTAAGGTGCTGCAAGAGATTGCTCAGGCGAAAGGAAAGACAGTAGCTCAGATATGTTTGAGGTGGGCTTTGGAGCAAGATGTGAGTATTCTGGTGAAGAGCTTCAACAAGGAGAGGATAGAAGAGAACCTTGAGATATTGGATTGGAAGTTGAGCCCGGAAGAGTCCCAAAAGATCGATGATATTGAACAGCAAAGAGGGTTTCTTGCACCTATGTTCGTATCAGAACATGGTCCTTACAAATCCCTCGAGGACTTCTGGGACGGAGAACTTTAG 1092 47.53 MLIVNNPNDNSLLSTLELGNFRWSGEMRRDRKEHQQSESRSKKMADIAGKPVGSGHARIPLLGFGTAVFPFTASETMKESILHAIKLGYRHIDAAAIYNSEPPVGEAIAEALGLGLIKSRAELFITSKLWCTDAHPDLVLPALRRTLKNLGLEYLDLYLIHFPVSLKPGSCEVPFEEKDLLPLDFKSVWEAMEECQSLGLSKLIGVSNFSCKKLQDLLVTAKISPAVNQVEMNPLWQQKKLREFCNGKGIHVTAYSPLGGRGTLWGTNRVLDCKVLQEIAQAKGKTVAQICLRWALEQDVSILVKSFNKERIEENLEILDWKLSPEESQKIDDIEQQRGFLAPMFVSEHGPYKSLEDFWDGEL* 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6241007 6248273 - Vvi1g558 Vvi1g558 769758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g558 363 ProSitePatterns Aldo/keto reductase family signature 2. 192 209 IPR018170 GO:0016491
Vvi1g558 363 PRINTS Aldo-keto reductase signature 84 108 IPR020471 GO:0016491
Vvi1g558 363 PRINTS Aldo-keto reductase signature 145 163 IPR020471 GO:0016491
Vvi1g558 363 PRINTS Aldo-keto reductase signature 192 209 IPR020471 GO:0016491
Vvi1g558 363 PRINTS Aldo-keto reductase signature 226 255 IPR020471 GO:0016491
Vvi1g558 363 PRINTS Aldo-keto reductase signature 270 294 IPR020471 GO:0016491
Vvi1g558 363 SUPERFAMILY NAD(P)-linked oxidoreductase 52 351 IPR036812 -
Vvi1g558 363 PANTHER ALDO/KETO REDUCTASE 55 361 - -
Vvi1g558 363 ProSitePatterns Aldo/keto reductase family putative active site signature. 303 318 IPR018170 GO:0016491
Vvi1g558 363 PANTHER OSJNBA0064H22.3 PROTEIN 55 361 - -
Vvi1g558 363 MobiDBLite consensus disorder prediction 26 51 - -
Vvi1g558 363 CDD AKR_AKR4A_4B 54 336 IPR044497 GO:0016616
Vvi1g558 363 PIRSF AKR 53 358 IPR020471 GO:0016491
Vvi1g558 363 Pfam Aldo/keto reductase family 62 335 IPR023210 -
Vvi1g558 363 Gene3D - 52 346 IPR036812 -
Vvi1g558 363 ProSitePatterns Aldo/keto reductase family signature 1. 88 105 IPR018170 GO:0016491
Vvi1g558 363 MobiDBLite consensus disorder prediction 26 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g558 K22374 DMAS1; 3''-deamino-3''-oxonicotianamine reductase [EC:1.1.1.285] - vvi:100257833 648.277
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g558 . . . . . . Bma14g01967 . . . . Cma04g00024 . Car04g00033 . . . Bhi07g00153 . . . Hepe01g0358 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 3 7