Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g559 ATGGGAAGCATTCCGGAGAAGGCCCTGGGATCAACAGGAAAAGCCATACCTCTGGTGGGCATGGGCACAGCTGTGTATCGTTCTGCCCCTTCGGAAACGAAAGACTCTGTTCTCCATGCAATAAAGGTTGGCTATCGACACTTCGACACAGCTTCTGTTTACAACTCCGAGAAACCCCTTGGTGAAGCCATAAAAAAGGCTTTACAGATTGGGCTCATTAATTCGCGGGATGAGCTTTTTGTCACGTCAAAGCTTTGGGGAAACAAAGCACACCCCCACTGCGTCCTTCCTACACTGCAACAAACACTCAAGAATCTTGAACTGGAGTACCTTGATCTCTATCTCATTCATTGGCCACTAAGCATGAAGCCTGGAAATTTTGAGTTTCCCGTGAAGAAGGAGGACCTTCTCCCCATGGATTATGCGTCCGTTTGGAAAGACCTGGAAGACTGTCAGAAGCTCGGTCTCACCAAAGCAATAGGTGTAAGCAACTTCTCAAGCAAAAAGCTTGATGACTTGCTCCGCATAGCCACAATCCCTCCGGCCGTCAATCAAGTGGAGATGAACCCACTTTGGCAGCAGAAGAAGCTTAGGGAGTTCTGTACAGAGAAAGGAATCCACATCACGGCCTACTCTCCTTTGGGTGCCAGAGGAACACCGTGGGGAGGTGACAGAGTTATGGAATGTCAAGTCCTGAAAGAAATTGCCCAAGCAAGAGGCAAAACGATTGCTCAGGTTTGTTTGAGGTGGATATACGAACAAGGTGTGAGTGTTGTCGTGAAGAGTTTCAACAAGGAAAGAATGAAAGAGAATCTAGCGATATTCGATTGGGAGCTAACAGCGGAGGATATACAGAAAATAGATCAAATTCAGCAATTTAAAGGGGTTCCAGCTCTGGAATTCATTAGCGATGAAGGCCCCTACAGGTCTCTCAAACCCTACTTTAACAGTCTTTTCACTCCTTTTATGAAAATGGCTAGCATTCCACGAGTGCCGATTGGCTCGTCTACGCTACCTCTTCTGGGCTTTGGGACGGCCGTATTTCCGTTTGCTGCATCAGAAACCATGAAAGAATCCATTCTCCATGCCATCAAACTGGGCTACAGACACATCGACGCCGCTTCTGTTTACAACTCGGAGCAGCCCCTGGGTGAAGCCATTACCGAAGCCTTAGGCCTTGGCCTAATCAAATCAAGGGAAGAGCTATTCGTCACCTCAAAGCTTTGGTGCTCCGATGCCCATCCTCACCTAGTCCTCCCTGCACTCAGCAAAACTCTCAAGAATCTTGGGTTGGAATACCTTGATCTCTACCTCGTTCATTTTCCGGTGAGCTTGAAGCCAGGGAGTTATGTGGTTCCTTTCGATAAAACGGAGCTGCTTCCCATGGATTTCAAGTCCGTCTGGGAAGCCATGGAGGTATGTCATAGCCTCGGCCTCGCAAAATCCATAGGAGTAAGCAACTTCTCTTGCAAGAAGCTTCAGGACTTGCTCGCCACCGCTAAGATTCCTCCGGCTGTCAATCAGGTGGAGATGAGTCCGCGATGGCAGCAGAAGAAGCTGAGGGAGTTCTGCAAGGGAAAGAATATCCATGTGACAGCATACTCTCCTTTAGGGGGCAGAGGAACTGTGTGGGGAACTAACGAAGTCCTTGGTTCTAAGATTCTGCAAGAGATTGCTCAGGCGAAAGGAAAAACAGTTGCTCAGATTTGTTTGAGGTGGGTTTTGGAGCAAGGAGCGAGTGTTGTTGTGAAGAGCTTTAACGAGGAGAGGATAAAAGAAAACATGGAGATATTGGACTGGGAATTAAGCTCTGAAGAGTCCCAAAAGATTGATCAACTTGAACAGCAGAAAGGGTTTCCGGGGGACATGTTTGTGTGGGAGGAAGGCCCCTACAAATCTATAGAGGAGTTTTGGGACGGAGAAATCTAG 1929 47.9 MGSIPEKALGSTGKAIPLVGMGTAVYRSAPSETKDSVLHAIKVGYRHFDTASVYNSEKPLGEAIKKALQIGLINSRDELFVTSKLWGNKAHPHCVLPTLQQTLKNLELEYLDLYLIHWPLSMKPGNFEFPVKKEDLLPMDYASVWKDLEDCQKLGLTKAIGVSNFSSKKLDDLLRIATIPPAVNQVEMNPLWQQKKLREFCTEKGIHITAYSPLGARGTPWGGDRVMECQVLKEIAQARGKTIAQVCLRWIYEQGVSVVVKSFNKERMKENLAIFDWELTAEDIQKIDQIQQFKGVPALEFISDEGPYRSLKPYFNSLFTPFMKMASIPRVPIGSSTLPLLGFGTAVFPFAASETMKESILHAIKLGYRHIDAASVYNSEQPLGEAITEALGLGLIKSREELFVTSKLWCSDAHPHLVLPALSKTLKNLGLEYLDLYLVHFPVSLKPGSYVVPFDKTELLPMDFKSVWEAMEVCHSLGLAKSIGVSNFSCKKLQDLLATAKIPPAVNQVEMSPRWQQKKLREFCKGKNIHVTAYSPLGGRGTVWGTNEVLGSKILQEIAQAKGKTVAQICLRWVLEQGASVVVKSFNEERIKENMEILDWELSSEESQKIDQLEQQKGFPGDMFVWEEGPYKSIEEFWDGEI* 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6248925 6263935 - Vvi1g559 Vvi1g559 769759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g559 642 ProSitePatterns Aldo/keto reductase family signature 1. 367 384 IPR018170 GO:0016491
Vvi1g559 642 Pfam Aldo/keto reductase family 341 614 IPR023210 -
Vvi1g559 642 Pfam Aldo/keto reductase family 20 291 IPR023210 -
Vvi1g559 642 CDD AKR_AKR4A_4B 337 615 IPR044497 GO:0016616
Vvi1g559 642 Gene3D - 335 642 IPR036812 -
Vvi1g559 642 ProSitePatterns Aldo/keto reductase family putative active site signature. 259 274 IPR018170 GO:0016491
Vvi1g559 642 SUPERFAMILY NAD(P)-linked oxidoreductase 8 297 IPR036812 -
Vvi1g559 642 PANTHER ALDO/KETO REDUCTASE 334 640 - -
Vvi1g559 642 PANTHER ALDO/KETO REDUCTASE 12 315 - -
Vvi1g559 642 Gene3D - 6 298 IPR036812 -
Vvi1g559 642 CDD AKR_AKR4A_4B 12 292 IPR044497 GO:0016616
Vvi1g559 642 PANTHER OSJNBA0064H22.3 PROTEIN 334 640 - -
Vvi1g559 642 PANTHER OSJNBA0064H22.3 PROTEIN 12 315 - -
Vvi1g559 642 ProSitePatterns Aldo/keto reductase family signature 2. 471 488 IPR018170 GO:0016491
Vvi1g559 642 ProSitePatterns Aldo/keto reductase family signature 1. 44 61 IPR018170 GO:0016491
Vvi1g559 642 PRINTS Aldo-keto reductase signature 40 64 IPR020471 GO:0016491
Vvi1g559 642 PRINTS Aldo-keto reductase signature 101 119 IPR020471 GO:0016491
Vvi1g559 642 PRINTS Aldo-keto reductase signature 148 165 IPR020471 GO:0016491
Vvi1g559 642 PRINTS Aldo-keto reductase signature 182 211 IPR020471 GO:0016491
Vvi1g559 642 PRINTS Aldo-keto reductase signature 226 250 IPR020471 GO:0016491
Vvi1g559 642 ProSitePatterns Aldo/keto reductase family putative active site signature. 582 597 IPR018170 GO:0016491
Vvi1g559 642 SUPERFAMILY NAD(P)-linked oxidoreductase 337 626 IPR036812 -
Vvi1g559 642 ProSitePatterns Aldo/keto reductase family signature 2. 148 165 IPR018170 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g559 K22374 DMAS1; 3''-deamino-3''-oxonicotianamine reductase [EC:1.1.1.285] - vvi:100252687 642.114
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g559 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 3 7