Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g56 ATGTTCGGGTTTATGAAATCTCCCATGAATAAACCTACACTCCCTGGACTAAACTTCAACATTGAGGACCAGTACAAGAACGATTTTCGCAACTCGGGAGGGCTAGAGAACCAGAGTGTGCAGGAACTGGAGAATTATGCTGCATACAAGGCTAAGGAGACTACCAAGACTGTCAACAACTGCCTGAAGATAGCTGAGGACATTAGGGAGGATGCTACCAATACCCTTGCCACTTTGCATCAGCAGGGTGAGCAAATCACCAGGACCCATATGATGGCTGCTGATATGGATAAGGATTTGAGCAAGGGTGAGAAGCTTTTGGGCAACCTTGGGGGCATGTTCTCCAGGACTTGGAAGCCAAAGAAATCCAAAGATATTACAGGGCCTCTTATCACAAGTGAAGACTCCAAAGGAGGGCCAGCCAGCTTGGAGCAGAGGCAAAAGCTGGGCTTAGCCCCAGCACCGAAAGGACGGACAACTTCTCGAGCACCTGGTCCTGAACCAACAGCTGCCATGCAGCAAGTTGAGGGAGAGATGTTGAAACAAGACGATGCCCTTTCTGACCTGAGTAATATCTTGGGGGACCTGAAGAATATGGCTGCTGACATGGGATCTGAACTTGATAGACAAAATAAAGCTCTTGATCATCTCAGTGATGATGTTGATGAGCTAAATGCTCGTGTGAAAGGCGCCAATCAGCGCGCACGACGACTACTTGCAAAGTGA 726 48.35 MFGFMKSPMNKPTLPGLNFNIEDQYKNDFRNSGGLENQSVQELENYAAYKAKETTKTVNNCLKIAEDIREDATNTLATLHQQGEQITRTHMMAADMDKDLSKGEKLLGNLGGMFSRTWKPKKSKDITGPLITSEDSKGGPASLEQRQKLGLAPAPKGRTTSRAPGPEPTAAMQQVEGEMLKQDDALSDLSNILGDLKNMAADMGSELDRQNKALDHLSDDVDELNARVKGANQRARRLLAK* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 593577 596330 - Vvi1g56 Vvi1g56 769256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g56 241 CDD SNARE_SNAP25N_23N_29N_SEC9N 45 109 IPR044766 GO:0005484|GO:0031201
Vvi1g56 241 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 21 241 - -
Vvi1g56 241 SMART tSNARE_6 171 238 IPR000727 -
Vvi1g56 241 SMART tSNARE_6 43 110 IPR000727 -
Vvi1g56 241 Gene3D - 34 112 - -
Vvi1g56 241 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 238 IPR000727 -
Vvi1g56 241 SUPERFAMILY SNARE fusion complex 38 108 - -
Vvi1g56 241 MobiDBLite consensus disorder prediction 120 169 - -
Vvi1g56 241 SUPERFAMILY SNARE fusion complex 171 239 - -
Vvi1g56 241 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 21 241 - -
Vvi1g56 241 Coils Coil 62 82 - -
Vvi1g56 241 Gene3D - 173 239 - -
Vvi1g56 241 Coils Coil 207 241 - -
Vvi1g56 241 CDD SNARE_Qc 179 237 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g56 K18211 - vvi:100249104 462.225