Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g56 ATGTTCGGGTTTATGAAATCTCCCATGAATAAACCTACACTCCCTGGACTAAACTTCAACATTGAGGACCAGTACAAGAACGATTTTCGCAACTCGGGAGGGCTAGAGAACCAGAGTGTGCAGGAACTGGAGAATTATGCTGCATACAAGGCTAAGGAGACTACCAAGACTGTCAACAACTGCCTGAAGATAGCTGAGGACATTAGGGAGGATGCTACCAATACCCTTGCCACTTTGCATCAGCAGGGTGAGCAAATCACCAGGACCCATATGATGGCTGCTGATATGGATAAGGATTTGAGCAAGGGTGAGAAGCTTTTGGGCAACCTTGGGGGCATGTTCTCCAGGACTTGGAAGCCAAAGAAATCCAAAGATATTACAGGGCCTCTTATCACAAGTGAAGACTCCAAAGGAGGGCCAGCCAGCTTGGAGCAGAGGCAAAAGCTGGGCTTAGCCCCAGCACCGAAAGGACGGACAACTTCTCGAGCACCTGGTCCTGAACCAACAGCTGCCATGCAGCAAGTTGAGGGAGAGATGTTGAAACAAGACGATGCCCTTTCTGACCTGAGTAATATCTTGGGGGACCTGAAGAATATGGCTGCTGACATGGGATCTGAACTTGATAGACAAAATAAAGCTCTTGATCATCTCAGTGATGATGTTGATGAGCTAAATGCTCGTGTGAAAGGCGCCAATCAGCGCGCACGACGACTACTTGCAAAGTGA 726 48.35 MFGFMKSPMNKPTLPGLNFNIEDQYKNDFRNSGGLENQSVQELENYAAYKAKETTKTVNNCLKIAEDIREDATNTLATLHQQGEQITRTHMMAADMDKDLSKGEKLLGNLGGMFSRTWKPKKSKDITGPLITSEDSKGGPASLEQRQKLGLAPAPKGRTTSRAPGPEPTAAMQQVEGEMLKQDDALSDLSNILGDLKNMAADMGSELDRQNKALDHLSDDVDELNARVKGANQRARRLLAK* 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 593577 596330 - Vvi1g56 Vvi1g56 769256

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g56 241 CDD SNARE_SNAP25N_23N_29N_SEC9N 45 109 IPR044766 GO:0005484|GO:0031201
Vvi1g56 241 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 21 241 - -
Vvi1g56 241 SMART tSNARE_6 171 238 IPR000727 -
Vvi1g56 241 SMART tSNARE_6 43 110 IPR000727 -
Vvi1g56 241 Gene3D - 34 112 - -
Vvi1g56 241 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 176 238 IPR000727 -
Vvi1g56 241 SUPERFAMILY SNARE fusion complex 38 108 - -
Vvi1g56 241 MobiDBLite consensus disorder prediction 120 169 - -
Vvi1g56 241 SUPERFAMILY SNARE fusion complex 171 239 - -
Vvi1g56 241 PANTHER SNAP25 HOMOLOGOUS PROTEIN SNAP30-RELATED 21 241 - -
Vvi1g56 241 Coils Coil 62 82 - -
Vvi1g56 241 Gene3D - 173 239 - -
Vvi1g56 241 Coils Coil 207 241 - -
Vvi1g56 241 CDD SNARE_Qc 179 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g56 K18211 SNAP25; synaptosomal-associated protein 25 - vvi:100249104 462.225
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g56 . . . . . Bpe10g00897 Bma14g01662 . Cmo04g01776 . . . . . . Cpe09g00936 Cpe01g01498 . . . . . . . . . . . . . . . . . . . . Chy10g01049 . . Blo11g00791 . . . . . . . . . Cma04g01693 . Car04g01730 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005869 2 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39