Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g560 ATGGGCACAGCTGCGTTTCCTTTTGCCCCTTCGGAAACCATGAAAGACTCTATTCTCCATGCAATAAAGGTTGGGTATCGACACTTCGACACAGCTTCTGCTTACAACTCCGAGAAACCCCTTGGTGAAGTCATAAAAAAGGCTTTAGAGCTTGGGCTCATTAAATCGCGGGAGGAGCTTTTCATCACGTCGAAGCTTTGGGGAAACGACGCACACCCCCACTGCGTCCTTCCTGCACTGCAACAAACACTCAAGAATCTTGAACTGGAGTACCTTGATCTCTATCTCATTCATTGGCCACTAAGCATGAAGCCTGGAAATTTTGAGTTTCCCTTGAAGAAGGAGGACCTTCTCCCCATGGATTATGCGTCCGTTTGGAAAGACCTGGAAGACTGTCAGAAGCTCGGTCTCACCAAAGCAATAGGTGTAAGCAACTTCTCAAGCAAAAAGCTTGATGACTTGCTCCGCATAGCCACAATCCCTCCGGCCGTCAATCAAGTGGAGATGAACCCACTTTGGCAGCAGAAGAAGCTTAGGGAGTTCTGTGCAGAGAAAGGAATCCACATCACGGCCTACTCTCCTTTGGGTGCCAGAGGAACACCGTGGGGAGGTGACAGAGTTATGGAATGTCAAGTCCTGAAAGAAATTGCCCAAGCAAGAGGCAAAACGATTGCTCAGGTTTGTTTGAGGTGGATATACGAACAAGGTGTGAGTGTTATCGTGAAGAGTTTCAACAAGGAAAGAATGAAAGAGAATCTAGAGATATTCGATTGGGAGCTAAGTGTGGAGGATATACAGAAAATAGATCAAATTCAGCAATTTAAAGGGGTTCCAGGCCTGGAATTCATTAGCGATGAAGGCCCCTACAAGTCTTATACTAAAAACGTCGTTACTGTTTATGGGCAATAA 909 46.09 MGTAAFPFAPSETMKDSILHAIKVGYRHFDTASAYNSEKPLGEVIKKALELGLIKSREELFITSKLWGNDAHPHCVLPALQQTLKNLELEYLDLYLIHWPLSMKPGNFEFPLKKEDLLPMDYASVWKDLEDCQKLGLTKAIGVSNFSSKKLDDLLRIATIPPAVNQVEMNPLWQQKKLREFCAEKGIHITAYSPLGARGTPWGGDRVMECQVLKEIAQARGKTIAQVCLRWIYEQGVSVIVKSFNKERMKENLEIFDWELSVEDIQKIDQIQQFKGVPGLEFISDEGPYKSYTKNVVTVYGQ* 303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6264419 6272529 - Vvi1g560 Vvi1g560 769760

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g560 302 Pfam Aldo/keto reductase family 2 272 IPR023210 -
Vvi1g560 302 ProSitePatterns Aldo/keto reductase family signature 2. 129 146 IPR018170 GO:0016491
Vvi1g560 302 ProSitePatterns Aldo/keto reductase family putative active site signature. 240 255 IPR018170 GO:0016491
Vvi1g560 302 SUPERFAMILY NAD(P)-linked oxidoreductase 2 295 IPR036812 -
Vvi1g560 302 CDD AKR_AKR4A_4B 1 273 IPR044497 GO:0016616
Vvi1g560 302 PRINTS Aldo-keto reductase signature 21 45 IPR020471 GO:0016491
Vvi1g560 302 PRINTS Aldo-keto reductase signature 82 100 IPR020471 GO:0016491
Vvi1g560 302 PRINTS Aldo-keto reductase signature 129 146 IPR020471 GO:0016491
Vvi1g560 302 PRINTS Aldo-keto reductase signature 163 192 IPR020471 GO:0016491
Vvi1g560 302 PRINTS Aldo-keto reductase signature 207 231 IPR020471 GO:0016491
Vvi1g560 302 PANTHER OSJNBA0064H22.3 PROTEIN 1 292 - -
Vvi1g560 302 ProSitePatterns Aldo/keto reductase family signature 1. 25 42 IPR018170 GO:0016491
Vvi1g560 302 PIRSF AKR 1 294 IPR020471 GO:0016491
Vvi1g560 302 PANTHER ALDO/KETO REDUCTASE 1 292 - -
Vvi1g560 302 Gene3D - 1 278 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g560 K22374 DMAS1; 3''-deamino-3''-oxonicotianamine reductase [EC:1.1.1.285] - vvi:100242453 586.26
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g560 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017108 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 1 0 0 0 0 0 1 0 3 7