Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g563 ATGGCAAAGTCACCTCAAGTGAGTCTTGGAGCTTGTGGACTCACCATGCCGGTACTTGGCATGGGAACTTCTTCCTGGCCTCCGGCCGACCCAGAAACGGCCAAGTTGGCAATTATCGAAGCCATCAAAGCCGGTTACCGCCACTTTGATACGGCATTCGCCTATGGATCCGAGCAGCCTCTGGGCCAAGCCATAGCTGAAGCTCTGCGCCTCGGTCTCATCAAGTCCAGGGATGATCTGTTCATCACCTCTAAACTATGGAGCAGCTATACTGACCGTGATCAAGTTGTGCCTGCAATCAAGATGAGTCTCCGGAACCTTCAATTGGACTACCTCGACATGTATCTGATACATTTGCCATTGAAACTGAGCCAAGAGATCCGTAAAACCCCAGTTCCAAAAGAGATATTAATGCCCTTGGACATCAAGTCAGTATGGGAAGGCATGGAAGAGTGTCAGAGACTGGGCCTCACTAAAGCCATTGGTGTCAGTAATTTCTCTCCTAGAATGCTCGAGGAGACACTGGCAATTGCCGAAATTCCTCCAGCAGTCAATCAAGTGGAGATGAACCCGCTTTGGCAGCAGAAGAAGCTACGAGAGCACTGCAACGCAAAGGGCATCCATATTACTGCTTACTCTCCTTTGGGTGCGAATGGGACCAAATGGGGAGACAACAGAATTGTGGAGTGTGATGTCCTGGAAGATATCGCCAAGGCTAGGGGAAAAACAACTGCTCAGGTGTCCATGAGATGGGTGTATGAACAAGGCGTGAGTATAGTAGCCAAGAGCTTCAACAAGGAGAGAATGAAACAGAACCTTGAGATATTCGATTGGTCATTGACGGAGGAAGAGTTGGAGAGGATCAGTCAGCTTCCTCAGCGCAAAGGATTTCTAATTTCTTCCATCCTTGGGGCCCATGATTTCACACTGCAGCTTGACGATGAGATTTGA 951 49.0 MAKSPQVSLGACGLTMPVLGMGTSSWPPADPETAKLAIIEAIKAGYRHFDTAFAYGSEQPLGQAIAEALRLGLIKSRDDLFITSKLWSSYTDRDQVVPAIKMSLRNLQLDYLDMYLIHLPLKLSQEIRKTPVPKEILMPLDIKSVWEGMEECQRLGLTKAIGVSNFSPRMLEETLAIAEIPPAVNQVEMNPLWQQKKLREHCNAKGIHITAYSPLGANGTKWGDNRIVECDVLEDIAKARGKTTAQVSMRWVYEQGVSIVAKSFNKERMKQNLEIFDWSLTEEELERISQLPQRKGFLISSILGAHDFTLQLDDEI* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6289242 6290820 + Vvi1g563 Vvi1g563 769763

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g563 316 SUPERFAMILY NAD(P)-linked oxidoreductase 7 298 IPR036812 -
Vvi1g563 316 PANTHER ALDO/KETO REDUCTASE 7 314 - -
Vvi1g563 316 PRINTS Aldo-keto reductase signature 41 65 IPR020471 GO:0016491
Vvi1g563 316 PRINTS Aldo-keto reductase signature 102 120 IPR020471 GO:0016491
Vvi1g563 316 PRINTS Aldo-keto reductase signature 149 166 IPR020471 GO:0016491
Vvi1g563 316 PRINTS Aldo-keto reductase signature 183 212 IPR020471 GO:0016491
Vvi1g563 316 PRINTS Aldo-keto reductase signature 227 251 IPR020471 GO:0016491
Vvi1g563 316 CDD AKR_AKR4A_4B 12 293 IPR044497 GO:0016616
Vvi1g563 316 ProSitePatterns Aldo/keto reductase family signature 1. 45 62 IPR018170 GO:0016491
Vvi1g563 316 ProSitePatterns Aldo/keto reductase family putative active site signature. 260 275 IPR018170 GO:0016491
Vvi1g563 316 Pfam Aldo/keto reductase family 19 290 IPR023210 -
Vvi1g563 316 Gene3D - 3 309 IPR036812 -
Vvi1g563 316 ProSitePatterns Aldo/keto reductase family signature 2. 149 166 IPR018170 GO:0016491
Vvi1g563 316 PANTHER D-GALACTURONATE REDUCTASE-LIKE 7 314 - -
Vvi1g563 316 PIRSF AKR 1 313 IPR020471 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g563 K19642 GALUR; D-galacturonate reductase [EC:1.1.1.365] - vvi:100233130 623.624
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003041 0 2 2 1 1 2 1 2 2 3 2 2 1 2 3 1 2 2 1 2 3 1 3 2 2 2 1 1 1 3 53