Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g565 ATGGCTTTAATGGTGCCCAAGGTGTCCATCGGCGCCAATGGCCGAGCCATGCCCGTTATTGGGATGGGCACTGCATCATTGTCGCCGGAGGCCATGCTCGAAGCTATTAGAATTGGCTACCGCCACTTCGACACTGCTTTCGTGTACGGCTCGGAGCAGCCTCTTGGCGAAGCAATTGCCCAAGCCCTGCACCTAGGGCTCATCAAATCCAGGGACGAGCTATTCATCACTTCGAAGCTCTGGTGCACCTCTGCCGAGAAAGACCTTGTCGTGCCCGCCATCAAGAAAAGCCTCGGGAATCTTCAACTGGAATACCTTGATCTGTTTCTGATACACTGGCCGCTGAGGCTGAGCAAAGAAATGCGCCAAATACCAAATATGGGGCTCACCAAAGCCATAGGCGTTAGTAATTTCTCCCGTAAGAAGCTTGAGGAGCTCATTTCCACTGCCAAGATCCTGCCGGCGGTCAATCAGGTGGAAATGCACCCAATGTGGCAGCAAAAGGAATTGGTTGATTTCTGCAAGACGAAGGGTATTCATGTCACTGCCTACTCTCCTTTAGGTGCAATAAGCACTTCAAAGAGAAACAACCAAACGGTGGCATCTAGCCTCGTGGAAGAGATAGCCAAGGCCCATGGCAAAACTTCTGCTCAGGTTTGTTTGAGGTGGTTGTATGAGCACGGGGTGAGCATGCTGCCGCAGAGTGGGAACAAGAAGAGGATGAAGGAGAACCTTATGATCTTTGATTGGGCTTTGAGTGGGGAAGAGCTAAACAAGTTTACCCAGCTTCCTCAGCACAAAATGCTCCGACCTTCCTCTTTTCTGGGCTCCCATGATTTGGTGCTGGAGACTGAAGAAGGCATATAG 867 51.1 MALMVPKVSIGANGRAMPVIGMGTASLSPEAMLEAIRIGYRHFDTAFVYGSEQPLGEAIAQALHLGLIKSRDELFITSKLWCTSAEKDLVVPAIKKSLGNLQLEYLDLFLIHWPLRLSKEMRQIPNMGLTKAIGVSNFSRKKLEELISTAKILPAVNQVEMHPMWQQKELVDFCKTKGIHVTAYSPLGAISTSKRNNQTVASSLVEEIAKAHGKTSAQVCLRWLYEHGVSMLPQSGNKKRMKENLMIFDWALSGEELNKFTQLPQHKMLRPSSFLGSHDLVLETEEGI* 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6306238 6307845 + Vvi1g565 Vvi1g565 769765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g565 288 PIRSF AKR 5 122 IPR020471 GO:0016491
Vvi1g565 288 PIRSF AKR 118 283 IPR020471 GO:0016491
Vvi1g565 288 PANTHER ALDO/KETO REDUCTASE 9 285 - -
Vvi1g565 288 ProSitePatterns Aldo/keto reductase family signature 1. 39 56 IPR018170 GO:0016491
Vvi1g565 288 Pfam Aldo/keto reductase family 30 262 IPR023210 -
Vvi1g565 288 ProSitePatterns Aldo/keto reductase family signature 2. 121 138 IPR018170 GO:0016491
Vvi1g565 288 SUPERFAMILY NAD(P)-linked oxidoreductase 8 266 IPR036812 -
Vvi1g565 288 PRINTS Aldo-keto reductase signature 35 59 IPR020471 GO:0016491
Vvi1g565 288 PRINTS Aldo-keto reductase signature 96 114 IPR020471 GO:0016491
Vvi1g565 288 PRINTS Aldo-keto reductase signature 155 184 IPR020471 GO:0016491
Vvi1g565 288 PRINTS Aldo-keto reductase signature 199 223 IPR020471 GO:0016491
Vvi1g565 288 PANTHER D-GALACTURONATE REDUCTASE-LIKE 9 285 - -
Vvi1g565 288 Gene3D - 4 283 IPR036812 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g565 K19642 GALUR; D-galacturonate reductase [EC:1.1.1.365] - qsu:112039897 364.385
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003041 0 2 2 1 1 2 1 2 2 3 2 2 1 2 3 1 2 2 1 2 3 1 3 2 2 2 1 1 1 3 53