Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g567 ATGGGGTCAGTGTTGGAAGGGGTGTTTCCCTACAGAGCGTTGGGGGAGGAGAGTTCTTCTTCTTCATCGAATCCAACGGACGCCGTGATTTTTGTTGGGATTTGTTTGGTTATGGGCATAGCTTGTAGGCAATTACTTCGGGGGACCAGGGTCCCTTACACCGTCGCTTTGCTCATCCTTGGCATTGCTCTTGGATCTTTAGAACATGGTACAAGTAATAAATTGGGAAAGATTGGTGATGGCATACGCCTTTGGGCAAATATTGATCCTAATCTTCTATTGGCTGTTTTTCTGCCTGCGCTTCTTTTTGAGAGTTCATTCTCAATGGAGGTGCACCAAATAAAGAGATGTATGGTACAAATGCTTATACTGGCTGGGCCAGGTGTTCTGGTTTCGACCTTCTGTCTTGGATCTGCTTTAAAGTTCACTTTCCCTTATGACTGGAGCTGGAAAACTTCATTGTTGCTCGGGGGACTTCTTAGTGCCACGGATCCTGTGGCTGTTGTGGCTCTACTGAAAGAGCTTGGTGCAGGCAAAAAACTGAGCACAATAATTGAAGGGGAATCCTTGATGAATGATGGGACAGCTATTGTGGTCTATCAGCTATTCTATCAAATGGTCCTTGGCAAGAGCTTTAACTTTGGTGCTGTAGTTAAATTTCTAACACAAGTGTCACTTGGAGCTGTAGGCATTGGTCTTGCTTTTGGGCTAGCATCTGTCTTGTGGCTCGGGTTTATCTTTAATGATACAGTGATAGAGATTACATTGACTCTTGCTGTGAGCTACATTGCTTACTTCACTGCTCAAGAAGGGGCTGATGTTTCTGGTGTTTTGGCAGTAATGACTTTGGGGATGTTTTATGCTGCAGTTGCTAAGACAGCTTTTAAGGGTGATGGTCAACAAAGCTTGCATCATTTTTGGGAGATGGTTGCTTATATTGCTAATACATTAATTTTCATCTTGAGCGGAGTTGTTATAGCAGAAGGTGTTCTGGGAAGCAATGATATTTTCAAAAACCATGGAAATTCATGGGGCTACCTCATTCTTCTTTATGTTTATGTCCAAGTCTCTCGGATTGTAGTTGTTGGAGTCTCATATCCCTTTCTGTGGTATTTTGGCTATGGCCTGGATTGGAAGGAAGCTATTATCCTCATATGGTCAGGCTTGCGAGGAGCTGTGGCATTGTCACTTTCACTGTCAGTTAAGCGTGCTAGTGACAGTTCATCATATCTCAGTTCAGAAACAGGAACACTGTTTGTTTTCTTCACTGGTGGAATTGTATTCCTGACACTTATTGTGAATGGCTCAACCACACAATTTATTTTACATCTTCTCAACATGGATAAGCTATCAGAAGTAAAGAGGCGCATATTGGACTATACAAAATATGAAATGTTGAACAAAGCATTGGAGGCCTTTGGTGATCTTGGAGATGATGAGGAACTAGGACCTGCTGACTGGCCCACAGTCAAAAGATATATTGCAAGCTTAAATGATGTAGAAGGGGGACTTGTACACCCTCATACTGTATATGAAAGTGATAATAATCTGTACCCTACAAATTTGAAAGATATACGCATACGCCTTTTGAATGGTGTTCAAGCTGCGTACTGGAGGATGCTTGATGAGGGGAGGATAACACAAACTACTGCAAATCTTTTGATGCAATCAGTGGATGAAGCACTCGACTTGGTTTCTGATGAACCTTTATGTGACTGGAAAGGTTTAAAAGCTAATGTTAATTTCCCAAATTATTACAGATTCCTTCAAACAAGCATCTGTCCACAAAAGCTTATTACATATTTCACGGTGGAAAGGTTGGAATCTGCATGTTACATCTGTGCTGCATTTTTACGTGCCCACAGAATTGCACGACGTCAACTACTTGACTTCATTGGTGATAGTGAAATTGCATCTACTGTCATTAATGAAAGTGAAGCAGAAGGAGAAGAAGCAAGAAAGTTCCTGGAAGATGTCCGTGTTACATTTCCTCAGGTTTTGCGTGTTGTGAAAACCAGGCAAGTAACTCATTCAGTGCTGCTACATTTAATTGATTATGTGCAAAATCTTGAGAAAATTGGATTGTTGGAAGAAAAGGAGATGTTCCATCTTCATGATGCTGTCCAGACAGACTTAAAAAAGCTTTTAAGAAATCCTCCTTTGGTAAAGATTCCAAGAATGCGTGATATGATTACAACCCATCCTTTGTTGGGGGCCCTTCCTTCTGCAGTCCGTGAACCACTTGAAAGTTCTACCAAGGAAATAATGAAAGTACGTGGTGTGGCACTTTACAGAGAGGGTTCAAAGCCAAGTGGTATCTGGCTCATATCTAGTGGAGTGGTCAAGTGGGCGAGTAAGAGCATAAGAAACAAGCACTCATTGCGTCCAACATTTACGCATGGGAGTACTTTGGGACTATATGAAGTGCTAATTGGAAAGCCTTATATATGTGACATGATAACAGATTCAGTGGTACTATGTTTTTTTGTTGAGACTGATAAAATAATGTCAATGCTCAGGTCAGATCCTGCAGTAGAAGATTTCCTGTGGCAGGAAAGTGCTATAGTTCTTGCAAAACTCTTGCTTCCTCAAATATTTGAGAAAATGGCAATGCAAGATTTGAGAGCCCTTGTTGCAGAAAAGTCAATAATGACCATATATATAAGTGGAGAAACTATAGAAATACCTCACTATTCCATTGGTTTTTTATTAGACGGATTCATAAAAGGCCAAGAAGAACTGATTACATATCCCGCTGCACTGATGCCTTCCCATAATCTCAGTTTCCGAAGTCTAGATACATCAGGTGCCAAGGTAGCTGGTTCTTCTCATCAAGGATCTCCGTATCAAGTTCAGACGAGAGCAAGAGTAATCATTTTCGACATTTCAGCATTTGAAGCAGACCGTGGTCTTCAAAGAAGGTCATCCTCATTGGTTCCTCATTCAGCCGATCAACCTTCAAGATCTCTCAGTAGAGAACATGGTGATCTTATGAGTTGGCCTGAACATTTCTACAAGCTAAGGCAAGACAATCAGAGCACTGAAGGGGACCGTTGGAAATCGAACAGCTTGTCTTATAAGGCAATGCAACTAAGCATTTTTGGCAGCATGGTTGGAACGCATCAGCACATTAGAAGTTTTCAAAGCAGTCGAGTTAAGCCATCACACAGCCTGTCATACCCAAGAGTGCCAACAACTCATGCCCCCCCACTTGTATCTGTCAGATCAGAAGGGCCTGCTACTGCGAGGAGAGGCATTGATATGGGAAAGTTAACAGGACAAAATCTGAAGCCCCCACTCCAAGGTACACCACACACAAAAGAGACTCATGAAGTAGATGATTCGAGTGAGGAGTCAGGAGTTGAGGATGAACTCCTTGTGAGAATTGATTCACCGAGCAAGCTTTCTTTTCATCAGGCTCCTTGA 3426 41.97 MGSVLEGVFPYRALGEESSSSSSNPTDAVIFVGICLVMGIACRQLLRGTRVPYTVALLILGIALGSLEHGTSNKLGKIGDGIRLWANIDPNLLLAVFLPALLFESSFSMEVHQIKRCMVQMLILAGPGVLVSTFCLGSALKFTFPYDWSWKTSLLLGGLLSATDPVAVVALLKELGAGKKLSTIIEGESLMNDGTAIVVYQLFYQMVLGKSFNFGAVVKFLTQVSLGAVGIGLAFGLASVLWLGFIFNDTVIEITLTLAVSYIAYFTAQEGADVSGVLAVMTLGMFYAAVAKTAFKGDGQQSLHHFWEMVAYIANTLIFILSGVVIAEGVLGSNDIFKNHGNSWGYLILLYVYVQVSRIVVVGVSYPFLWYFGYGLDWKEAIILIWSGLRGAVALSLSLSVKRASDSSSYLSSETGTLFVFFTGGIVFLTLIVNGSTTQFILHLLNMDKLSEVKRRILDYTKYEMLNKALEAFGDLGDDEELGPADWPTVKRYIASLNDVEGGLVHPHTVYESDNNLYPTNLKDIRIRLLNGVQAAYWRMLDEGRITQTTANLLMQSVDEALDLVSDEPLCDWKGLKANVNFPNYYRFLQTSICPQKLITYFTVERLESACYICAAFLRAHRIARRQLLDFIGDSEIASTVINESEAEGEEARKFLEDVRVTFPQVLRVVKTRQVTHSVLLHLIDYVQNLEKIGLLEEKEMFHLHDAVQTDLKKLLRNPPLVKIPRMRDMITTHPLLGALPSAVREPLESSTKEIMKVRGVALYREGSKPSGIWLISSGVVKWASKSIRNKHSLRPTFTHGSTLGLYEVLIGKPYICDMITDSVVLCFFVETDKIMSMLRSDPAVEDFLWQESAIVLAKLLLPQIFEKMAMQDLRALVAEKSIMTIYISGETIEIPHYSIGFLLDGFIKGQEELITYPAALMPSHNLSFRSLDTSGAKVAGSSHQGSPYQVQTRARVIIFDISAFEADRGLQRRSSSLVPHSADQPSRSLSREHGDLMSWPEHFYKLRQDNQSTEGDRWKSNSLSYKAMQLSIFGSMVGTHQHIRSFQSSRVKPSHSLSYPRVPTTHAPPLVSVRSEGPATARRGIDMGKLTGQNLKPPLQGTPHTKETHEVDDSSEESGVEDELLVRIDSPSKLSFHQAP* 1142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6328678 6391646 + Vvi1g567 Vvi1g567 769767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g567 1141 Gene3D Jelly Rolls 698 862 IPR014710 -
Vvi1g567 1141 Gene3D - 149 201 - -
Vvi1g567 1141 SUPERFAMILY cAMP-binding domain-like 713 850 IPR018490 -
Vvi1g567 1141 MobiDBLite consensus disorder prediction 1045 1062 - -
Vvi1g567 1141 PANTHER - 22 967 - -
Vvi1g567 1141 MobiDBLite consensus disorder prediction 1045 1141 - -
Vvi1g567 1141 MobiDBLite consensus disorder prediction 974 993 - -
Vvi1g567 1141 PANTHER SODIUM/HYDROGEN EXCHANGER 22 967 IPR018422 GO:0006812|GO:0015299|GO:0016021
Vvi1g567 1141 Pfam Sodium/hydrogen exchanger family 30 442 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Vvi1g567 1141 ProSiteProfiles cAMP/cGMP binding motif profile. 736 839 IPR000595 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g567 - - vvi:100243891 2179.44