Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g568 ATGTTCTGGACCCTTACTCTTATTGGGGTTGTCAAGTATGCCTCTATTGCTCTCAAAGCTGACGATCAGGGTGAAGGAGGAACCTTTGCCTTGTATTCGTTACTCTGTAGGAATTTGAATATTGGAATCCTACCTTCCAAGTGCATGGATTCAAACTCAAAGGTTTCTCATTCCAGCGGGCATGAGGGTGCGAAGGATCATAGTAGGCTTGGGAAATTTTTTGAAAAAAGTATAATTGCCAGAAGGGTGTTACTTTTTATAGCTATGTTAGGCACGTGCATGCTAATTGGTGATGGCATACTTACTCCTGCAATCTCAGTCTTGTCAGCAATGGATGGGATACGTGCACCTTTCCCTTCTGTCAGTAAATCTTTGGTGGAAGCTATTTCTGCAGCAGTCCTAATTCTTCTGTTCCTGATGCAAAAGTTTGGAACCTCACGAGTGAGCTTCCTTTTTTCCCCCATCATGGGTGCATGGACCATCACGACTCCACTTGTAGGAATTTATAGCATTGTACAACATTACCCAAGTATATTCAAGGCTTTGTCACCGCATTACATCTTCCATTTCTTTTGGAGAAGAGGAAAAGATGGCTGGCTGTTGCTTGGTGGTACCGTCCTTTGCATCACTGGCTCTGAAGCGTTGTTTGCGGATCTCGGACATTTCAGCAGGCCCTCAATTCAGATTGCCTTTTTTCTCACCATATATCCATCTCTGGTTTTGACATATGCCGGGCAAACAGCATACCTGATCAAGAACCCCAATGATCATGATGATGGATTTTACAAGTTTATACCAACTCCAATCTACTGGCCAATTTTCATCATAGCCACATCGGCTGCTATTGTTGCAAGCCAGTCCCTAATATCAGCAACCTTTTCTATTATCAAGCAATCTGTAGTACTGGATTATTTTCCCCGGGTGAAAGTGGTGCACACCTCCCCTAGCAAAGAAGGCGAGGTTTACTCCCCAGAAATAAACTATATCCTGATGATTCTTTGTGTTCTTGTGATACTAATTTTTGGGGATGGAAAAGATATCGGAAATGCTTTTGGTGTTGTTGTTAGTTTAGTGATGCTGATCACCACTATATTACTCACATTGGTCATGATCATGATATGGAGAACTCCACCAGTCCTGGTTGCCCTCTACTTCTTCGTTTTTTTTGTGATGGAGGGTGTTTATGTGAGTGCTGTCTTCACAAAATTTCTAGAGGGAGGATGGATTCCTTTTGCCATTTCCTTGATACTTGCCTTCATAATGTTTGGGTGGTTCTATGGGAGGCAGAGAAAAATAGAATACGAGTTGACCCACAAGATAAGCTTGGACAGACTTGAACAGCTCTTATCTGACACAGGTGTCCAGAGGGTTCCTGGATTGTGCTTCTTTTACACCAATATTCAAGATGGTCTGACTCCAGTTCTGGGACATTACATAAAGAACATGAAATCCCTTCACAAGGTCACCATTTTCACTACCCTGAGTTACTTGTTGGTTCCAAAGGTTGCTCAACATGAGAGGATTGTCGTCGACAAACTGGGCCTCAAAGGGGTGTATGGGTGTGTGATTCAATATGGCTATGCAGATTCTCTTAATCTTGAAGGTGATGATTTTGTAAGTCTAGTGACCAATAGCTTGCAGGCTTATATACAGAAAGACACTGATCCGGAGATTGAAGAAGAGATTTTGGACTTGGAAGAGGCAAGGCGGTCTGGAGTGGTTCATATTCGAGGCAAGGCGAGGTTTTATACAGGCAAGAGTTGTAGATGGTTTGATAGAATCATGCTCGCATTTTATGAAGTTCTGCACAGTAATTGTAGGACTGCACTGCCTGCTTTGGGGGTTCCTCTGCCTCAGCGCATTGAAGATCTTACTTTTTTAAGGAAAGATGCAATTGAAAGAACATTAATATTTGAAAAGGAATAA 1926 42.42 MFWTLTLIGVVKYASIALKADDQGEGGTFALYSLLCRNLNIGILPSKCMDSNSKVSHSSGHEGAKDHSRLGKFFEKSIIARRVLLFIAMLGTCMLIGDGILTPAISVLSAMDGIRAPFPSVSKSLVEAISAAVLILLFLMQKFGTSRVSFLFSPIMGAWTITTPLVGIYSIVQHYPSIFKALSPHYIFHFFWRRGKDGWLLLGGTVLCITGSEALFADLGHFSRPSIQIAFFLTIYPSLVLTYAGQTAYLIKNPNDHDDGFYKFIPTPIYWPIFIIATSAAIVASQSLISATFSIIKQSVVLDYFPRVKVVHTSPSKEGEVYSPEINYILMILCVLVILIFGDGKDIGNAFGVVVSLVMLITTILLTLVMIMIWRTPPVLVALYFFVFFVMEGVYVSAVFTKFLEGGWIPFAISLILAFIMFGWFYGRQRKIEYELTHKISLDRLEQLLSDTGVQRVPGLCFFYTNIQDGLTPVLGHYIKNMKSLHKVTIFTTLSYLLVPKVAQHERIVVDKLGLKGVYGCVIQYGYADSLNLEGDDFVSLVTNSLQAYIQKDTDPEIEEEILDLEEARRSGVVHIRGKARFYTGKSCRWFDRIMLAFYEVLHSNCRTALPALGVPLPQRIEDLTFLRKDAIERTLIFEKE* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6391852 6397625 - Vvi1g568 Vvi1g568 769768

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g568 641 PANTHER POTASSIUM TRANSPORTER 17-RELATED 1 622 - -
Vvi1g568 641 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 622 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vvi1g568 641 TIGRFAM kup: potassium uptake protein 1 620 IPR003855 GO:0015079|GO:0016020|GO:0071805
Vvi1g568 641 Pfam K+ potassium transporter 1 529 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g568 K03549 kup; KUP system potassium uptake protein - vvi:100257576 1192.95
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g568 . . . . . . . . . . . . Car04g00999 . . . . Bhi07g00467 . . . . . . Cla07g00469 Cam07g0504 Cec07g0559 Cco07g0523 Clacu07g0513 Cmu07g0551 Cre07g0885 . . . . Lsi04g01031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0029940 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 2