Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g57 ATGGAGACTGCGAAAGCCGCAAGAACTGTGAAAGACGTTTCTCCTCACGAGTTCGTCAAGGCCTATTCTTCTCACCTCAAGCGATCTGGGAAGATAGAGCTTCCTCACTGGACTGATATTGTGAAGACTGCTACGTTCAAGGAGCTTGCTCCATATGATCCTGATTGGTACTATGTAAGAGCTGCTTCAATGGCAAGGAAAATTTATTTGAGGCAGGGTCTAGGAGTTGGTGGCTTCCGAAGAATTTATGGTGGGAGCAAGAGGAATGGAAGTCGCCCACCCCACTTCTGTAAGAGCAGTGGTTCCATTGCTCGCCACATACTCCAACAGTTGGAGAAGATGAACATTATTGAAAATGACCCCAGGGGTGGAAGGAGAATCACATCCAGTGGCCAGCGGGATCTCGACCAAGTTGCTGGACGGATTGTAGTTGCCCTTTAA 441 48.3 METAKAARTVKDVSPHEFVKAYSSHLKRSGKIELPHWTDIVKTATFKELAPYDPDWYYVRAASMARKIYLRQGLGVGGFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLEKMNIIENDPRGGRRITSSGQRDLDQVAGRIVVAL* 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 599212 602915 + Vvi1g57 Vvi1g57 769257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g57 146 PANTHER 40S RIBOSOMAL PROTEIN S19-3 6 145 - -
Vvi1g57 146 Gene3D - 1 145 IPR036388 -
Vvi1g57 146 SMART Ribosomal_S19e_2 9 145 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi1g57 146 Pfam Ribosomal protein S19e 9 143 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vvi1g57 146 ProSitePatterns Ribosomal protein S19e signature. 93 112 IPR018277 GO:0003735|GO:0005840|GO:0006412
Vvi1g57 146 SUPERFAMILY Winged helix DNA-binding domain 9 144 IPR036390 -
Vvi1g57 146 PANTHER 40S RIBOSOMAL PROTEIN S19 6 145 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g57 Vvi17g628 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g57 K02966 - vvi:100266271 298.13