Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g572 ATGGTTCTCTCAAAAACTGCTTCTGAGTCGGATGTCTCCGTGCACTCCACCTTTGCCTCTCGCTACGTGAAAGCTTCGCTTCCGAGGTTCAAGTTGCCGGAGAACTCGATCCCGAAGGAGGCGGCGTACCAGATCATAAACGACGAACTGATGCTTGATGGCAATCCTAGGCTAAACCTGGCTTCGTTTGTGACTACTTGGATGGAGCCTGAATGTGATAAGCTTATGATGGCTGCCATAAACAAGAACTATGTGGACATGGATGAATACCCGGTTACCACTGAGCTTCAGAACCGATGCGTGAACATCATAGCCCATCTATTCAATGCTCCATTGGAAGACTCAGAGGCTGCCGTGGGAGTGGGGACGGTGGGGTCCTCCGAGGCGATAATGCTAGCAGGGCTTGCTTTCAAGAGGAAGTGGCAGAACAAGAGAAAGGCTGAGGGGAAGCCTTATGACAAGCCCAACATCGTCACTGGTGCTAATGTTCAGGTGTGCTGGGAGAAGTTCGCAAGGTACTTTGAGGTAGAACTGAAGGAAGTGAAATTGAGGGACGGCTACTATGTAATGGACCCAGAGAAAGCTGTGGAAATGGTGGATGAAAACACCATCTGTGTTGCGGCAATCTTGGGCTCAACTCTCAATGGAGAATTTGAAGATGTTAAGCTCTTGAACGATCTCTTGGTCGAAAAGAACAAGCAAACAGGATGGGATACCCCAATTCATGTTGATGCAGCTAGTGGTGGATTCATTGCACCATTCCTTTATCCGGAACTGGAGTGGGACTTCCGCCTTCCATTGGTGAAGAGCATTAATGTTAGTGGCCACAAGTATGGCCTCGTATATGCTGGAATTGGGTGGGTTGTTTGGAGGAGCAAAGAGGACTTGCCCGAAGAACTTATCTTTCACATAAACTACCTTGGAGCCGATCAACCAACCTTCACTCTCAATTTCTCCAAAGGTTCTAGTCAAGTCATCGCCCAGTATTATCAACTAATTCGCTTGGGTTTCGAGGGATACCGAAATGTGATGGAGAATTGCCAGGAAAATGCTATGGCGCTGAAAGAAGGACTGGAGAAGACTGGGCGCTTTAACATCATCTCCAAGGACAATGGGGTCCCTCTGGTGGCCTTCTCTCTCAAGGACAATTCATGCCATGATGAGTTTGAGGTTGCAGACATGCTTCGCCGCTTCGGCTGGATTGTGCCTGCCTACACCATGCCACCAGATGCTCAGCATGTTACAGTGCTCCGAGTTGTGGTTAGGGAAGACTTTTCACGCACCCTTGCTGAGCGCCTTGTATTTGACATCACCAAGGTGCTCCATGAACTTGATATGCTCCCAGCAAAGCTCAGTGCCAAGATTTCTAAAACGAACGGCGTTTGTTAG 1389 48.74 MVLSKTASESDVSVHSTFASRYVKASLPRFKLPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLEDSEAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLRDGYYVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKQTGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVVWRSKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGFEGYRNVMENCQENAMALKEGLEKTGRFNIISKDNGVPLVAFSLKDNSCHDEFEVADMLRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTLAERLVFDITKVLHELDMLPAKLSAKISKTNGVC* 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6433122 6436008 - Vvi1g572 Vvi1g572 769772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g572 462 Gene3D - 1 65 - -
Vvi1g572 462 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi1g572 462 PANTHER GLUTAMATE DECARBOXYLASE 1 459 - -
Vvi1g572 462 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Vvi1g572 462 CDD DOPA_deC_like 59 439 - -
Vvi1g572 462 PANTHER GLUTAMATE DECARBOXYLASE 1 459 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g572 462 Gene3D - 361 448 - -
Vvi1g572 462 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g572 462 Gene3D - 66 360 IPR015421 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g572 K01580 - vvi:100266215 920.613