Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g573 ATGGTTCTCTCAGTTGTTCAGGGGTGCGAAGAAGAATCATCCAGCGTTGTTAGCTCAGTTTTTGCATCAAGATATGTTCAGGACCCACCTCCAAGGTATAAGATGCCGGAGAAATCGATTCCAAAAGAAGCAGCATACCAGATAGTACACGATGAATTACTATTAGATGGTCTTCCCAGGCTTAACTTGGCTACATTCGTCACCACATGGATGGAACCTGAGTGTGATAAGCTGATGGCAGAAGCCATCAACAAGAATTATGTAGACATGGATGAATACCCAGTCACAACTGAGCTTCAGAATCGGTGCGTGAACATGATTGCAAAACTTTTCAACGCTCCATCAGCTGATCAGACAAAACAAGCAGTTGGAGTTGGGACAGTGGGATCCTCAGAGGCAATGATGTTGGCCGGATTGGCATTCAAGAAGAAGTGGCAAAACAAGAGAAAGGCGCAAAAGAAACCTTTTGACAAGCCTAATATTGTTACTGGTGCCAATGTTCAGGTTTGTTGGGAGAAATTTGCAAGATACTTTGAAGTGGAGTTGAAGGAAGTGAAACTAAGAGAAGGGTACTATGTGATGGACCCGGTGAAAGCGGTGGAGATGGTGGATGAGAACACCATCTGTGTTGCAGCTATCCTGGGTTCTACCTTCAATGGTGAATTTGAAGATGTCAAGCTCTTGAACACTCTCCTTACTCAAAAGAACAAGAGAACTGGGTGGGACACCCCAATTCATGTGGATGCAGCCAGTGGAGGATTTGTGGCTCCTTTTTTATACCCAGAACTGGAATGGGATTTCCGGCTACCTTTGGTGAAGAGCATCAATGTCAGCGGCCACAAATACGGCCTTGTCTACGCTGGAGTTGGGTGGGCCATTTGGAGGAGCAAAGAGGAATTGCCTGAAGAACTCATCTTCCACATAAACTACCTTGGTGGTGATGAACCCACCTTCACCCTCAACTTCTCCAAGGGGTCCAGTCAGGTTATTGCACAATACTACCAGTTCTTGCGCATGGGCTTTGAGGGATACAAGAAAGTGATGAGCAACTGCATGGAAAGTGCGAGGATACTTCGAGAGGGATTGGAGAAAACAGGGCGTTTCCAAATAATTTCAAAGGAGAAAGGAGTACCCGTCGTGGCCTTTGCATTCAAGGGTAACGATCGTAAAAACTTGGCATTCGGATTATCAAAAGCCTTGAGGAACTACGGGTGGATTGTTCCAGCTTACACGATGCCAGCCAATGCGGAGAATGTCACGGTCCTTCGGGTGGTTGTTCGTGAGGACTTTGGGCGGCAGCTGGTTGAGAAGTTGCTTTTCCACATTGGAGTTGCGTTGAAGGAGGTCACGGATGCAGCAAGTAGTGTTCCAATGATAAGACTTACAGTGGAAATGAAGGCAGATGAGAGTGAAATGAATGCAGGTGAGGGAACTCTACACATACCGGCGGCTTCAGTGCACTGGAAGCATGATAAACCCGAAACTGTTGACACTCAAGTGCCCATAATGGATGGTAAAACTAAAGGGAATTGTAGGCTGTGGGTTCTTTCCACGAAGATTAAAAAAGGATGGGTGCAAATGTTGGTCACGTTTAGGGTAGGCCCCACTGGCACCGGAGACTACAGTTCGTGGTCAATTTGGGGATTTGATATTAGTATTACCACCCCACTGTTTCTTTTTGGTTCTAGAAAAAGGAAAAGGTAG 1704 46.13 MVLSVVQGCEEESSSVVSSVFASRYVQDPPPRYKMPEKSIPKEAAYQIVHDELLLDGLPRLNLATFVTTWMEPECDKLMAEAINKNYVDMDEYPVTTELQNRCVNMIAKLFNAPSADQTKQAVGVGTVGSSEAMMLAGLAFKKKWQNKRKAQKKPFDKPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYVMDPVKAVEMVDENTICVAAILGSTFNGEFEDVKLLNTLLTQKNKRTGWDTPIHVDAASGGFVAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGVGWAIWRSKEELPEELIFHINYLGGDEPTFTLNFSKGSSQVIAQYYQFLRMGFEGYKKVMSNCMESARILREGLEKTGRFQIISKEKGVPVVAFAFKGNDRKNLAFGLSKALRNYGWIVPAYTMPANAENVTVLRVVVREDFGRQLVEKLLFHIGVALKEVTDAASSVPMIRLTVEMKADESEMNAGEGTLHIPAASVHWKHDKPETVDTQVPIMDGKTKGNCRLWVLSTKIKKGWVQMLVTFRVGPTGTGDYSSWSIWGFDISITTPLFLFGSRKRKR* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6436134 6443174 - Vvi1g573 Vvi1g573 769773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g573 567 SUPERFAMILY PLP-dependent transferases 16 443 IPR015424 -
Vvi1g573 567 Gene3D - 69 364 IPR015421 GO:0003824
Vvi1g573 567 PANTHER GLUTAMATE DECARBOXYLASE 1 511 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g573 567 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 19 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Vvi1g573 567 PANTHER GLUTAMATE DECARBOXYLASE 1 511 - -
Vvi1g573 567 Gene3D - 365 452 - -
Vvi1g573 567 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 385 IPR002129 GO:0016830|GO:0019752|GO:0030170
Vvi1g573 567 Gene3D - 1 68 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g573 K01580 - vvi:100261008 1006.51