Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g576 ATGGTGAGTCTTGTGCAAACCGCCATTCTGGTGTTATCATTCTTGGTCTCAACGGCCATGGCGGCTGAGGAAGCTTCATCTACGATTGCACCACCACCAACAATATTGTTTCAACAGCCTGGGGACCAACCATTCTCAGCAACATCTCTCCTCGCTCCCATCTTGATCAACCTTGGCTTCCAAGAATTCGCAATGGCTGTTCATGCTCTATCTGCCGCGCCCACCCTCAACACCTGGACTGGTCCTTCCACCATCTTTGCACTCACCGACTCCTCCATCCATTCCTGTCCTTCCTGCTCCATCCCTCGGCTCCTCCAGGAACACACTGTTCCAGGCCTCTTTTCCTCTCACCACCTGCGCAATTTAGCCTTTGGCACCAAGATCGAGACCAGCTTCCCTGGCCGATGCATCACCGTCACCTCCGCTTCCAACAACTCCAAGATCTTCATCGAAGGTGTTGAAATCACTCATCCGGATCTCTTCAACAACGGCTTCATACTCGTTCATGGCCTCGATGGCTTTGCATCTCACCTCTCTCCTTTCTCGTGCAATGTCGAGAGATTCGCCACTCTCTCCTTTTCGCCTCCTCAGCCCTCAGATTCTCCACAGGTACCTCCTCCATTTTCTGTGATCCGCCTGATGCTAAGTGACGCAATGCTTCGCTTGCGTATCAGTGGCTTTGGCATACTCGCTCTGGCAATGAGGGTGAAGTACTCCGAGCTCGTCCAACTCCAGAACATGACGGTGTTCGCACTCGATGATGCCACCATCTTCTCCGGTGGACGCGAGTATATCAGCAATGTGAGGTTTCACATTGTTCCGAACATGCTGCTGATGGCCGACGATCTGAATAAACTTCCGGTGCAGACGGTATTGCCAACGCTGGAACATGGCCAGACTCTGAAGGTGACCGACGGCGGAGGTGGATCAAATCCCATGAGGATCAATTACGTTCGGCTCAAGAGCCCTGATATTGTGCACAACCTCAAGATCGTGGTTCATAGCTTGTTCTTGCCGTTCCCGCACCTTCAACCCCGAGTCGAGGGAACCGAAGGGCTGGAATGGAATGCAGCAGGACCAGATGTGATGGAATCGAACGGTGAGATGGTTGATATGGACCCAACGCGGGAAATCATACCAACGGATGAGATCGAAATCGAAGATCATCACGGTCTATAA 1179 52.25 MVSLVQTAILVLSFLVSTAMAAEEASSTIAPPPTILFQQPGDQPFSATSLLAPILINLGFQEFAMAVHALSAAPTLNTWTGPSTIFALTDSSIHSCPSCSIPRLLQEHTVPGLFSSHHLRNLAFGTKIETSFPGRCITVTSASNNSKIFIEGVEITHPDLFNNGFILVHGLDGFASHLSPFSCNVERFATLSFSPPQPSDSPQVPPPFSVIRLMLSDAMLRLRISGFGILALAMRVKYSELVQLQNMTVFALDDATIFSGGREYISNVRFHIVPNMLLMADDLNKLPVQTVLPTLEHGQTLKVTDGGGGSNPMRINYVRLKSPDIVHNLKIVVHSLFLPFPHLQPRVEGTEGLEWNAAGPDVMESNGEMVDMDPTREIIPTDEIEIEDHHGL* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6467602 6468781 - Vvi1g576 Vvi1g576 769776

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g576 392 SUPERFAMILY FAS1 domain 237 334 IPR036378 -
Vvi1g576 392 SUPERFAMILY FAS1 domain 51 173 IPR036378 -
Vvi1g576 392 PANTHER OS02G0491300 PROTEIN 33 346 - -
Vvi1g576 392 Gene3D FAS1 domain 37 175 IPR036378 -
Vvi1g576 392 PANTHER OS02G0491300 PROTEIN-RELATED 33 346 - -
Vvi1g576 392 ProSiteProfiles FAS1/BIgH3 domain profile. 47 175 IPR000782 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g576 - - - vvi:104880115 749.584
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .