Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g58 ATGATTGCCGATGTATCCAAGTCTGATAAAATTATTCTATCCAACCCAGAATTCCTTGCTGAGGGAACTGCAATTCAGGATCTAGATGTATATGCCCATTGGGTCCCTGTGGAGCGTATTATTTGCACCAATCTTTGGTCTGCTGAGCTCTCAAAGCTCGCTGCCAATGCCTTTTTGGCACAGAGGATCTCTTCGGTTAATGCCATGTCAGCTCTCTGTGAGGCCACTGGCGCAGATGTCACTGAAGTGTCTCATGCTGTTGGTAAGGACACAAGAATTGGGCCCAAGTTCCTGAACGCCAGTGTTGGTTTCGGTGGCTCCTGCTTCCAGAAGGATATCTTGAACTTGGTATATATCTGTGAGTGCAATGGGCTTCCTGAGGTAGCAAACTACTGGAAACAGGTCATTAAGGTGAATGACTACCAGAAGACCCGCTTTGTTAACCGGGTGGTTTCCTCAATGTTTAACACAGTCTCAGGCAAGAAGATCGCCATTCTAGGCTTTGCCTTCAAGAAGGACACTGGTGACACAAGGGAGACCCCAGCCATTGATGTGTGCAAGGGGCTGTTGGGTGACAAAGCCCATTTGAGCATATATGACCCTCAGAAGTTTGATTGGGACCATCCAATTCATCTTCAACCCTTGAGCCCCACCTCTGTGAAGCAAGTCAGTGTGGTCTGGGATGCCTATACTGCTACAAAGGATGCCCATGGAATCTGCATCCTGACCGAGTGGGATGAGTTCAAGTCCCTTGATTACAAGAAGATCTATGACAACATGCAGAAACCCGCATTCGTCTTTGATGGGCGGAACGTTGTGGATGCAGAGAAACTGAGGGAAATCGGATTCATTGTTTACTCCATTGGTAAGCCATTGGATGCATGGCTCAAGGACATGCCCGCTGTGGCATAA 912 47.92 MIADVSKSDKIILSNPEFLAEGTAIQDLDVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAHLSIYDPQKFDWDHPIHLQPLSPTSVKQVSVVWDAYTATKDAHGICILTEWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 605266 607892 + Vvi1g58 Vvi1g58 769258

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g58 303 PIRSF UDPglc_DH_bac 2 30 IPR028357 GO:0000271|GO:0003979
Vvi1g58 303 PIRSF UDPglc_DH_bac 28 292 IPR028357 GO:0000271|GO:0003979
Vvi1g58 303 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 29 303 - -
Vvi1g58 303 SMART UDPG_MGDP_dh_C_a_2_a 164 275 IPR014027 GO:0016616|GO:0051287
Vvi1g58 303 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 46 140 IPR014026 GO:0016616|GO:0051287
Vvi1g58 303 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 46 145 IPR008927 -
Vvi1g58 303 Gene3D - 45 76 - -
Vvi1g58 303 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 151 286 IPR036220 -
Vvi1g58 303 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 164 274 IPR014027 GO:0016616|GO:0051287
Vvi1g58 303 PIRSF UDPglc_GDPman_dh 28 290 IPR017476 GO:0016616
Vvi1g58 303 PIRSF UDPglc_GDPman_dh 2 36 IPR017476 GO:0016616
Vvi1g58 303 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 29 303 IPR028356 GO:0003979
Vvi1g58 303 Gene3D - 77 301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g58 K00012 UGDH, ugd; UDPglucose 6-dehydrogenase [EC:1.1.1.22] - vvi:100261061 580.096
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g58 Vvi17g626 ECH
Vvi1g58 Vvi14g1620 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g58 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0907 Cone6ag0539 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000749 3 5 3 2 3 4 3 4 4 3 3 4 3 3 3 3 4 5 3 4 4 2 2 3 3 3 2 2 3 2 95