Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g58 ATGATTGCCGATGTATCCAAGTCTGATAAAATTATTCTATCCAACCCAGAATTCCTTGCTGAGGGAACTGCAATTCAGGATCTAGATGTATATGCCCATTGGGTCCCTGTGGAGCGTATTATTTGCACCAATCTTTGGTCTGCTGAGCTCTCAAAGCTCGCTGCCAATGCCTTTTTGGCACAGAGGATCTCTTCGGTTAATGCCATGTCAGCTCTCTGTGAGGCCACTGGCGCAGATGTCACTGAAGTGTCTCATGCTGTTGGTAAGGACACAAGAATTGGGCCCAAGTTCCTGAACGCCAGTGTTGGTTTCGGTGGCTCCTGCTTCCAGAAGGATATCTTGAACTTGGTATATATCTGTGAGTGCAATGGGCTTCCTGAGGTAGCAAACTACTGGAAACAGGTCATTAAGGTGAATGACTACCAGAAGACCCGCTTTGTTAACCGGGTGGTTTCCTCAATGTTTAACACAGTCTCAGGCAAGAAGATCGCCATTCTAGGCTTTGCCTTCAAGAAGGACACTGGTGACACAAGGGAGACCCCAGCCATTGATGTGTGCAAGGGGCTGTTGGGTGACAAAGCCCATTTGAGCATATATGACCCTCAGAAGTTTGATTGGGACCATCCAATTCATCTTCAACCCTTGAGCCCCACCTCTGTGAAGCAAGTCAGTGTGGTCTGGGATGCCTATACTGCTACAAAGGATGCCCATGGAATCTGCATCCTGACCGAGTGGGATGAGTTCAAGTCCCTTGATTACAAGAAGATCTATGACAACATGCAGAAACCCGCATTCGTCTTTGATGGGCGGAACGTTGTGGATGCAGAGAAACTGAGGGAAATCGGATTCATTGTTTACTCCATTGGTAAGCCATTGGATGCATGGCTCAAGGACATGCCCGCTGTGGCATAA 912 47.92 MIADVSKSDKIILSNPEFLAEGTAIQDLDVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVIKVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAHLSIYDPQKFDWDHPIHLQPLSPTSVKQVSVVWDAYTATKDAHGICILTEWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 605266 607892 + Vvi1g58 Vvi1g58 769258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g58 303 PIRSF UDPglc_DH_bac 2 30 IPR028357 GO:0000271|GO:0003979
Vvi1g58 303 PIRSF UDPglc_DH_bac 28 292 IPR028357 GO:0000271|GO:0003979
Vvi1g58 303 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 29 303 - -
Vvi1g58 303 SMART UDPG_MGDP_dh_C_a_2_a 164 275 IPR014027 GO:0016616|GO:0051287
Vvi1g58 303 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 46 140 IPR014026 GO:0016616|GO:0051287
Vvi1g58 303 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 46 145 IPR008927 -
Vvi1g58 303 Gene3D - 45 76 - -
Vvi1g58 303 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 151 286 IPR036220 -
Vvi1g58 303 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 164 274 IPR014027 GO:0016616|GO:0051287
Vvi1g58 303 PIRSF UDPglc_GDPman_dh 28 290 IPR017476 GO:0016616
Vvi1g58 303 PIRSF UDPglc_GDPman_dh 2 36 IPR017476 GO:0016616
Vvi1g58 303 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 29 303 IPR028356 GO:0003979
Vvi1g58 303 Gene3D - 77 301 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g58 Vvi17g626 ECH
Vvi1g58 Vvi14g1620 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g58 K00012 - vvi:100261061 580.096