Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g580 ATGGGGAGCTGCGGTAGGAATGGAGCCGTAAGGCAGTATATCAGATCAAAGGTGCCGCGTTTGAGGTGGACTCCTGAGCTTCATCACTGTTTTGTTCATGCCATTGAGAGGCTTGGAGGTCAAGACAAGGCTACTCCTAAGCTGGTGCTTCAGTTAATGGATGTGAGAGGACTCACCATTTCACATGTGAAGAGTCATCTCCAGATGTATAGAAGTATGAAGAGTGATATTGGCAGACAAGATAGGAGTTCCACCCAACAAAGAAAGCAATCTTTTGAGGATCATGATGGGTGTGTGGATGAAGAAACTGGCGATGTTGGTTTTCACCCACCTTTAAAATCCATTGAAGAATCGGATTCTCAGTTTATCTACAGTCCACTCCGTGCCAAAAGAGCTCGAATCGAGACGATGAGTTCCATCTCAGAGAACCTGCAATGCAGCCAAAGAATATGTGAGACAGTCGCAACTCCGTACAGTTTTGATGATTATCTGGCTGAGAAAAGGGGAATAAAGGAGGGTGGTGGTTTCAGGTGGCAGACCCAGGCTCCCTCCCCAGCCTTCCCTCTGCCCCACGATCTTTACAACCTCAATCCTTTCGGATATGCTGCGGAAGAATCTGATTTCCTCAAGATTGCCAAGCTAGAAGATCAAAAGCATGCTGTAGCCCAAATGAATAAAAATGAGGATAACGAAAGGAGACCGGCGGATGGTGAGGAAGCTGGTGGCTGTGGGTTATCGTTGTCGCTCTCGTTGCATCATCCCTCCACGCAGAGAAGTAATGCTTCTTCGACGAGCGAGATCAGTGAGGCATTCTCATCATACCCTAGGTCTAACTTCAAAGACAGCTTTGGATCTTATTCAGAAGAACGCAGTATTAATTTAGACCTATCCATAGCTCTCTGTGGCATTTAA 912 46.49 MGSCGRNGAVRQYIRSKVPRLRWTPELHHCFVHAIERLGGQDKATPKLVLQLMDVRGLTISHVKSHLQMYRSMKSDIGRQDRSSTQQRKQSFEDHDGCVDEETGDVGFHPPLKSIEESDSQFIYSPLRAKRARIETMSSISENLQCSQRICETVATPYSFDDYLAEKRGIKEGGGFRWQTQAPSPAFPLPHDLYNLNPFGYAAEESDFLKIAKLEDQKHAVAQMNKNEDNERRPADGEEAGGCGLSLSLSLHHPSTQRSNASSTSEISEAFSSYPRSNFKDSFGSYSEERSINLDLSIALCGI* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6602501 6605920 + Vvi1g580 Vvi1g580 769780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g580 303 SUPERFAMILY Homeodomain-like 17 74 IPR009057 -
Vvi1g580 303 Gene3D - 18 75 - -
Vvi1g580 303 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 302 - -
Vvi1g580 303 MobiDBLite consensus disorder prediction 75 100 - -
Vvi1g580 303 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Vvi1g580 303 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 302 IPR044848 GO:0003700
Vvi1g580 303 Coils Coil 211 231 - -
Vvi1g580 303 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vvi1g580 303 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g580 - - - vvi:100262842 590.112
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g580 . . . . . . . . . . . . . Car04g00002 . . . . . . . . . . . . . . . . . . Cone19ag0672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000208 2 11 4 0 3 5 10 6 5 5 6 6 9 5 5 8 6 2 8 6 5 5 4 6 6 7 3 12 8 5 173
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14521 PF00249 Myb_DNA-binding 5.40E-07 CL0123 Vvi TF