Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g585 ATGGTAACAGTTGCACCCTTGGGGACCCACTCTTGCATGGTTTGCATGCTTCTTACGACGATGGAGTTGCCTGATGTTGTTCTGATGGCAGCTAGTATCGTAGGCTTCATTGCTCTCTGTAAACCCCTCGTTGGTCTTGTGAAATGGGTGTGGGCGATGTTCTTAAGGCCTCCAAAGAATCTGAAAGAATATGGCTCGTGGGCTCTCGTCACTGGCTCCACTGATGGGATAGGCAAAGCCATGGCTTTTGAATTGGCATCAAAGGGTCTCAGCTTGGTGCTAGTGGGTCGAAACCCTTCTAAACTCAAAGCTGTGTCGAATGAGATACGGGAAAGGCATGGTGAACAAGTTGAAGTTAAAAGTATTGTCATCGACTTTGCAAAGTTCAGCGGGGAGGAGATAGCGGCATTTATAAAGGAAGGAATAGAAGGAACAGATGTTGGTGTTTTGATTAATAATGTGGGCTTGGCATACCCTTACGCTAGGTTCTTTCATGAGGTTGACTTGGAGTTGATGGGAAGTGTCATGAGAGTGAATATAGAAGGAGCAACTTGGGTCACCAGATCAGTGCTTCCAGGCATGCTTGAGAAGAAAAAAGGGGCAATTATCAACATTTGCTCGGGTTCTGTTCTGCTGCCATCTTACCCATTAGTCACCCTTTACGTTGCAGCCAAAGCGTACATGGCAATGTTGTCAAAATCTATTAATTTGGAGTACCAGCAATATGGAATCGATGTTCAGTGCCAGTTTCCATTACTTGTGGCAACAAAGATGGCATTCATAAAGAGGTCTTCCTTCTTCGTTCCATCGCCAGAGACATTCAGCAAGGCAAGCATACGGTGGTTTGGATATGAGCATGTATGCGTGCCCTATTGGCCACATTGTGTGCAGTGGTGCCTTCTACGTCTACTACCAAATGCATTATGGGATTGGTGTGTCCTGCGACACTTTCTTGGGGTGCGAAAGAGAGCACTGGTGAAAGCCTACAAGAATAATGTAGTGAATCAAAAGAACCCATGA 1020 45.78 MVTVAPLGTHSCMVCMLLTTMELPDVVLMAASIVGFIALCKPLVGLVKWVWAMFLRPPKNLKEYGSWALVTGSTDGIGKAMAFELASKGLSLVLVGRNPSKLKAVSNEIRERHGEQVEVKSIVIDFAKFSGEEIAAFIKEGIEGTDVGVLINNVGLAYPYARFFHEVDLELMGSVMRVNIEGATWVTRSVLPGMLEKKKGAIINICSGSVLLPSYPLVTLYVAAKAYMAMLSKSINLEYQQYGIDVQCQFPLLVATKMAFIKRSSFFVPSPETFSKASIRWFGYEHVCVPYWPHCVQWCLLRLLPNALWDWCVLRHFLGVRKRALVKAYKNNVVNQKNP* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6634487 6643684 + Vvi1g585 Vvi1g585 769785

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g585 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 145 156 IPR002347 -
Vvi1g585 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 208 IPR002347 -
Vvi1g585 339 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Vvi1g585 339 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 65 314 IPR036291 -
Vvi1g585 339 Pfam short chain dehydrogenase 67 259 IPR002347 -
Vvi1g585 339 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 22 329 - -
Vvi1g585 339 PIRSF 11-beta-HSD1 16 327 - -
Vvi1g585 339 PANTHER RH59310P 22 329 - -
Vvi1g585 339 PRINTS Glucose/ribitol dehydrogenase family signature 67 84 IPR002347 -
Vvi1g585 339 PRINTS Glucose/ribitol dehydrogenase family signature 145 156 IPR002347 -
Vvi1g585 339 PRINTS Glucose/ribitol dehydrogenase family signature 194 210 IPR002347 -
Vvi1g585 339 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Vvi1g585 339 PRINTS Glucose/ribitol dehydrogenase family signature 242 259 IPR002347 -
Vvi1g585 339 CDD 17beta-HSD1_like_SDR_c 65 305 - -
Vvi1g585 339 Gene3D - 61 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g585 K10251 HSD17B12, KAR, IFA38; 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase [EC:1.1.1.62 1.1.1.330] - vvi:100259451 647.121
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g585 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3