Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g586 ATGAGCTTTACACAAACAAAAAACTTAGATCTTCTTACGACGATGGAGTTGCCTGATTTTGTTCTGATGGCAGCTAGTATCGTAGGCTTCATTGCTATCTGTAAACCCCTCGTCGGTCTTGTGAAATGGGTGTGGGCGATGTTCTTAAGGCCTCCAAAGAAACTGAAAGAATATGGCTCGTGGGCTCTCGTCACTGGCTCCACTGATGGGATAGGCAAAGCCATGGCGTTTGAATTGGCATCAAAGGGTCTTAGCTTGGTGCTAGTGGGTCGAAACCCTTCTAAACTCAAAGCTGTGTCGAGTGAGATACGGGAAAGGCATGGTGAACAAGTTGAAGTTAAAAGTATTGTCATCGACTTTGCAAAGTTCAGCAGGAAGGAGATAGCGGCATTTATAAAGGAAGGAATAGAAGGGATAGACGTTGGTGTTTTGATTAATAATGTGGGCTTGTCATACCCTTACGCTAGGTTCTTTCATGAGGTTGACTTGGAGTTGATGGGAAGTGTCATGAGAGTGAATATAGAAGGAGCAACTTGGGTCACCAGATCAGTGCTTCCAGGCATGCTTGAGAAGAAAAAAGGGGCAATTATCAACATTTGCTCGGGTTCTGTTCTGCTTCCATCTTACCCATTAGTCACCCTTTACGTTGCAGCCAAAGCGTACATAGCAATGCTGTCAAAATCTCTTAATTTGGAGTATCAGCAATATGGAATCGCTGTTCAGTGCCAGTTTCCATTATTTGTGGCAACAAAGATGATATTCACAAAGAGGTCTTCCTTCTTCGTTCCATCGCCAGAGACATTCAGCAAGGCAAGCATACGGTGGTTTGGATATGAGCATGTATGTGTGCCCTATTGGCCACATTGTGTGCAGTGGTGCCTTCTACGTCTACTACCGAATGCATTATGGGATTGGTGTATCCTGCGACACTTTCTTGGGGTGCGAAAGAGAGGACTGGTGAATGCCTACAAGAAAAATGGGGTGAATCAAAAGAACCCAAGAGTTGTCGGCATGTGGTTGATTTTGCGTGGCCAAGAATCCCAGATCCACTGGGCTTCAGCTTCAGACGATCCATCGACAATGGAGCTGCCTGACCTTGTTCTAATGGCAGCTAGTATCTTAGGCTTCATTGCACTCTGTAAAACCCTCGTCAGGCTTGTGAGATGGGCGTGGACGATGTTCTTGAGACCTCCAAAGAATCTGAAAGAATATGGCTCATGGGCGCTCGTCACTGGCTCTACTGATGGGATTGGCAAAGCCATGGCCTTTGAGTTGGCATCAAAGGGTCTTAGCTTGGTGTTAGTGGGTCGAAACCCTTGTAAACTCGAGGCCGTGTCGAATGAGATACGGGAAAGGCATGGCGAAGGAGTTGAAGTTAAAAATATTGTTATAGACTTTGCAAAGCTTAGCGAGGAGGAGATAGCAAGAAGGATAGACGAAGGAATAAAAGGGATGGATGTTGGTGTTTTGGTTAATAATGTGGGTTTGGCATACCCTTACCCGAGGTTCTTTCATGAGGTGAACTTAGAGTTGATGGAGAGTGTTGGAAGAGTGAATATAGGTGGGACGACTTGGGTCACCAGATCAGTGCTTCCAGGCATGCTTAAGAAGAAAAAAGGGGCGATTATCAACATTGGATCCGCTTCTGTTTGGCTTCAATCTTACCCTTTAGCCACCCTCTATGCTGCTACCAAAGCGTACATGGCAATGTTCTCAAAATCTATCTCTATGGAGTATCGGCAGTATGGAATCGATGTTCAGTGCCAGTTTCCATTACTTGTGGCAACAAAGATGACATTGATCAAGAGGTCTTCCTTACTCATTCCATCACCAGAGACATTTAGCAAGGCAAGCATACGGTGGTTTGGATATGAACATGAATGTACGCCCTATTGGCCACATTCTGTACAGTGGTACGTTTCAAGCCTACTGCCAAATGCTCTATTGGATTGGTGTGTCCTCCGATACTTTCTTGGAATGCGAACGCGAGGACAAGCCAAGGAGCGGAAGAAAAGTAGGGTACGAGTCCTTGTGAGGCCAACAGCTATGTTAAAAAAGATTTTTTTTTTTTTTTTTTTGCTGTTGCTTTTCACTTATTAA 2100 44.9 MSFTQTKNLDLLTTMELPDFVLMAASIVGFIAICKPLVGLVKWVWAMFLRPPKKLKEYGSWALVTGSTDGIGKAMAFELASKGLSLVLVGRNPSKLKAVSSEIRERHGEQVEVKSIVIDFAKFSRKEIAAFIKEGIEGIDVGVLINNVGLSYPYARFFHEVDLELMGSVMRVNIEGATWVTRSVLPGMLEKKKGAIINICSGSVLLPSYPLVTLYVAAKAYIAMLSKSLNLEYQQYGIAVQCQFPLFVATKMIFTKRSSFFVPSPETFSKASIRWFGYEHVCVPYWPHCVQWCLLRLLPNALWDWCILRHFLGVRKRGLVNAYKKNGVNQKNPRVVGMWLILRGQESQIHWASASDDPSTMELPDLVLMAASILGFIALCKTLVRLVRWAWTMFLRPPKNLKEYGSWALVTGSTDGIGKAMAFELASKGLSLVLVGRNPCKLEAVSNEIRERHGEGVEVKNIVIDFAKLSEEEIARRIDEGIKGMDVGVLVNNVGLAYPYPRFFHEVNLELMESVGRVNIGGTTWVTRSVLPGMLKKKKGAIINIGSASVWLQSYPLATLYAATKAYMAMFSKSISMEYRQYGIDVQCQFPLLVATKMTLIKRSSLLIPSPETFSKASIRWFGYEHECTPYWPHSVQWYVSSLLPNALLDWCVLRYFLGMRTRGQAKERKKSRVRVLVRPTAMLKKIFFFFFLLLLFTY* 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6653069 6670306 + Vvi1g586 Vvi1g586 769786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g586 699 PRINTS Glucose/ribitol dehydrogenase family signature 407 424 IPR002347 -
Vvi1g586 699 PRINTS Glucose/ribitol dehydrogenase family signature 485 496 IPR002347 -
Vvi1g586 699 PRINTS Glucose/ribitol dehydrogenase family signature 534 550 IPR002347 -
Vvi1g586 699 PRINTS Glucose/ribitol dehydrogenase family signature 561 580 IPR002347 -
Vvi1g586 699 PRINTS Glucose/ribitol dehydrogenase family signature 582 599 IPR002347 -
Vvi1g586 699 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 405 619 IPR036291 -
Vvi1g586 699 CDD 17beta-HSD1_like_SDR_c 405 645 - -
Vvi1g586 699 Gene3D - 55 278 - -
Vvi1g586 699 Gene3D - 401 622 - -
Vvi1g586 699 CDD 17beta-HSD1_like_SDR_c 59 299 - -
Vvi1g586 699 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 485 496 IPR002347 -
Vvi1g586 699 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 540 548 IPR002347 -
Vvi1g586 699 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 561 580 IPR002347 -
Vvi1g586 699 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 548 576 IPR020904 GO:0016491
Vvi1g586 699 Pfam short chain dehydrogenase 61 253 IPR002347 -
Vvi1g586 699 Pfam short chain dehydrogenase 407 599 IPR002347 -
Vvi1g586 699 PANTHER RH59310P 362 671 - -
Vvi1g586 699 PANTHER RH59310P 16 324 - -
Vvi1g586 699 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 362 671 - -
Vvi1g586 699 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 16 324 - -
Vvi1g586 699 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 59 321 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g586 K10251 HSD17B12, KAR, IFA38; 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase [EC:1.1.1.62 1.1.1.330] - vvi:100244068 684.1
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g586 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1103 Cone19ag1091 . . . . . . . . . . . . . . . . . Cma04g01799 Cma05g00060 . Car05g00050 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0024308 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 3