Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g588 ATGGAACTCAGTTTAGCCTCCGATTCCCATGCGAACCCACCGTACAATACGGTTTTCATCGACACCAGCCTCGATACCCATATCGCAATGATCGTCTCTGATGTCGATACCGTCGCCGATCTCAAAAAGAAAATACTGCTTGAACACCCCCTGTGCTTTTCTAGCATTGGAAAGATAAAGATTCATGCTTTAAAGGTCAAGAGAAAAGGATTCTTTTATCACCTCTCAGACTCCATGTTTGTTAGAAGTGCTTTCGATGGGGTTAAAAGAACTTGGTTCCTCCATGTTGATGCTTCTAGTTCAGTGGAGCAGAGTGAAAATCAGCTCGCATGTAATCCTGATTCTGGCAACCTACTACTGTGTCTTCCTTCAGCAGATGGAGTTGATCTTCAACCTGATGAACCTTCTAAAAAGTTGTCTGTCCTTGATGAATCATCATTGCCCCAAATTAAGGCCAACCAGTCTGCAAATGAGAAAGTTCTTAGTGCTGATGAATTTGGTTCTGGTGATCCCATTGTTGAACGATCAAAAGTTCTAGAGATGGAAGTTAAACATATTAGTGATGATCATCACAAAACTTCATTTGTTTCCAACAAGAAGTCAGATCCTGAGGAGAAATGCAACCTGTATAGTGGGGAGATTGAATTACCTGGGGGACATACTAAACAGAAGAAAAATGACAACAGAATTGATGATATGCAATATAATGGTTCATTGGAAGGAGCTTTAAAGACTGAGCCCATTCCAAAGAAAAGGCAAAAGATTAAAAATAAACACAAAGATGCATTATCTGATCATGCTTTGAAAGAAGACAATGCTCCTCCTTTTCATGCATCTGGTAAAGATACATCACAGCAAGAGAATGTAATCCTGGAGAATCCTGTATGCAATGCAGGTGTCAAAGTTCCAAATGATATGAAGATGGGAAACAAACAGATTAGTGATGACCCTGGTGAAAAATCTTCTTCTGAAATCAGTAAGAGATCAGATTATGGGGTACAGAAGAAACATGATCCGTGTGAGGAGATTCAAGTTCAAGGAACACATGTTGAATGCCATGATATCAAACTGAAGGATACAATTGATGTGCAATGCAATAGTTCTCTGGGAGGAATTGCACAACCTAAGCCTGCTGCAAAGAAAAAGCGTAAGATTGTAAAGAATAATGAGTCTGAAGGTCCTGTGAAAGAGAATGAGGCTCTGCTCAGTAATTTTAATAAAGAAACTTCAGAGGCCAAGATTGGAAGCACTGAGAACACTTTGGAGAATGAACAGAAGATTATAAATTCTAATTTAGAAGGTTTGCCTACTCAACCCCCAGAACCTAACTGTTTGATTAGAACCAGTTCAAGCACTGGGAAGAGGAAAAGGAAAAAGAAATCATCCAATCCTTGTAGCCAAGCAGTCTCAGAAATTCCTTCGGAGAAAGATGCTAGGCAAGAGAGTTCAAATGCAACAGTGGAAATTAACCACAAGGATTCTGGTAGAGAATTTGATACTGCAATTGTTCCAGGAGAGAGCATCCAGGATGCCACCCATAGCAGACCTTATGCTCTCTCTCTTAAGGAAAAGTACAGTGGTCCTGTCCAAGCAGTAGAAATACCCAGTTTATCACCCGACATTGATATGAATGAAGCTGATGCTAGCAATATGGGAAGAAAAAGTGATGTATCTGAACTAGGAGCTGCTTACGAAGTTAAAAGAACAAAAAGTTCAAAGAAGCATCATGCTGTTGATGGGAGAGACCTTTCAGTTAAAGAGCTTGATAGCCTCAGAAAGGACTTAGAGCTTTCTGAACAAGAGAATGTTGTGCCTGGTGATCATCTGAAACTTCGGATTGATCAAACTGATAAAAGTGAGGGAGAAAAAGAAATGTCATTGAACAATGATCCTAACGGGATGCTGTCTGAAAAGTGCAGATTGTCTAGATTTGATGGATCAGAAATGAACATGAAAGAGGTGATCGCCTCTTCTAAATTATTGGATGCCAGTGTGGGTATGGAACATCAGAAACCTGCAGTTAAGAGAAAGAAGTCAAAGAAAGCTAAGAACTCAGTTGAAGGAACACCAGTTGGATCCAATATGGAACATGCTAAAGATACTTTGAATGGCTTTGCTTCAACTGAGCCTCACAATGCTTTTAACGGCAATCATTCCAGTAATGAAGCTGATAAGGGGGAAAGCATCTTGTCTCAAACAGAAAGGACGGAAGTATTGAAAACAAAAGTGAAAAATACTTCTCTTTTGGGTGTTGATAGGGAAATTGATGCGATGAGTGGAAATGAAATGGAATCCTTTCATCTAACTCATATCAGTAAAACTCAAGTGAACACGGAAGACATGGCAGATGTTAAAGTGAGAAAGAAAACAAAGAAACAAAGTTCTACTGCAAAGAATCTTTCAGATTTGCAAAAGAAAGAACTAGATGTTGGTCCTGAAGTTTCGACCTCTTCCACTCATAAAATCAAGGTTGATGTTCCATCAAAAATCAAAAGGAAGACTAAATCAGTGAAGACTAGTTCCACAAATCAGTTCAAGAGATCGAAGTTGGAAACTGAGAAAGATGCTGCGACTGAAGTTGAATCTCTTCATCCTAAACAGGATCCTGGGACTTTTGACTCTTCTCAAATTCCGTCATCATATGCACTGGAAAATAACCCTGTGGGGAGGCCTCTTGAAGCTAATGTTGACGGTAACCTCCTTAAACTTGCATGCATTAATGAAGCCAATGATCACAAGGAAGTTTCTAGCTGTCAAAGTGATATGGTTAATATGCCTAGACAATCACTGCATAAAGTTGTTGCTCCTGCTCAAGTACTTGCTGACGAGGATACTAAAGTGAAAAGATCAGAAAGAGTCTCCAAGACTAATAAGAACAAAAAAATGTCTAATGTAGATTCGGTAGCCACCTCACGTGATCTACAGAACTCCTTAAAGACCAACAAGAGCCAGGATGTTGAAAAAAAATCTGAAGGTGACAATCAACTTCAGGATCCATTATCCGTGGATGGACATAACAAACTCATGCCTGAGTCTGTCAGCAAGTTTTCAAAAGTTTCCAGAAATGATTTGAAATCTCCTCATGACATTGGTAAGTTTGATACAATTCCTGAGGAAATCAGATGGCCTAATGTTGTTAATGCTTCTGGCACCAGTAGCACTGCCCATGCCTTTTTGAAAGAAAATGGTAAAGCCTCTTTATCTACCTCGAGTTCAGACAGTTCAGAGGACAGAACTTACCAAAATAAAAGGGGTAAGCGTCAGTCAAATTTGGACCGTTATCGTGTGACAGTTAGAAAAGCTCCCAGAAAAAATCCTGGAGAAGTTGTGAACAGTTCTCACCAAAGGAAGAGTCTATTAGCTACATATGGATCTATTTTTAATGATGGTGGCAGTGAAAGTTCTGAAGATCATGATGGTGTTGAGAATTCAGATGCCAGCACTAGAACACCATCAGATAGTTCAGCTTCATCTGACTACACAGAAGGAGAAAACAATCAACATCTGGACTCATCACATGGATTGTACAGCACAAAAAGAAATGAAAGTGGTGCCAAAAGTATTGGAAAATCTAACTCCTCAGGGTCAAAGAATGTAACCATGGATGTGATCCTCAGAAGTTCAAGCCGATTCAAGAAGGCAAAGCTTACTGCTTCACAGTCAGAACTGAATGACACTGAAAGCCAGCATTTTCAAGGCACTGCACCCCTCAAAATGCTTCCTCATTCAGATCTCATCCTGTTGAGCTGGTTCAGAGCCGGTTGTAGAATATTGTACAGAACCCAGAGAATAGCTGGAGTCACAACAAAGAGCAGAAGCTGTCCCCGGCAGGATCGCAGGAGCTCAAGGTCGAGAAGATGGCTCCGGCGATGGCAGTACCTGCTAGGGAAGTTGACAAGTTTTGGTTCTCGGATGATTTCAGGGTGGTGA 3930 40.41 MELSLASDSHANPPYNTVFIDTSLDTHIAMIVSDVDTVADLKKKILLEHPLCFSSIGKIKIHALKVKRKGFFYHLSDSMFVRSAFDGVKRTWFLHVDASSSVEQSENQLACNPDSGNLLLCLPSADGVDLQPDEPSKKLSVLDESSLPQIKANQSANEKVLSADEFGSGDPIVERSKVLEMEVKHISDDHHKTSFVSNKKSDPEEKCNLYSGEIELPGGHTKQKKNDNRIDDMQYNGSLEGALKTEPIPKKRQKIKNKHKDALSDHALKEDNAPPFHASGKDTSQQENVILENPVCNAGVKVPNDMKMGNKQISDDPGEKSSSEISKRSDYGVQKKHDPCEEIQVQGTHVECHDIKLKDTIDVQCNSSLGGIAQPKPAAKKKRKIVKNNESEGPVKENEALLSNFNKETSEAKIGSTENTLENEQKIINSNLEGLPTQPPEPNCLIRTSSSTGKRKRKKKSSNPCSQAVSEIPSEKDARQESSNATVEINHKDSGREFDTAIVPGESIQDATHSRPYALSLKEKYSGPVQAVEIPSLSPDIDMNEADASNMGRKSDVSELGAAYEVKRTKSSKKHHAVDGRDLSVKELDSLRKDLELSEQENVVPGDHLKLRIDQTDKSEGEKEMSLNNDPNGMLSEKCRLSRFDGSEMNMKEVIASSKLLDASVGMEHQKPAVKRKKSKKAKNSVEGTPVGSNMEHAKDTLNGFASTEPHNAFNGNHSSNEADKGESILSQTERTEVLKTKVKNTSLLGVDREIDAMSGNEMESFHLTHISKTQVNTEDMADVKVRKKTKKQSSTAKNLSDLQKKELDVGPEVSTSSTHKIKVDVPSKIKRKTKSVKTSSTNQFKRSKLETEKDAATEVESLHPKQDPGTFDSSQIPSSYALENNPVGRPLEANVDGNLLKLACINEANDHKEVSSCQSDMVNMPRQSLHKVVAPAQVLADEDTKVKRSERVSKTNKNKKMSNVDSVATSRDLQNSLKTNKSQDVEKKSEGDNQLQDPLSVDGHNKLMPESVSKFSKVSRNDLKSPHDIGKFDTIPEEIRWPNVVNASGTSSTAHAFLKENGKASLSTSSSDSSEDRTYQNKRGKRQSNLDRYRVTVRKAPRKNPGEVVNSSHQRKSLLATYGSIFNDGGSESSEDHDGVENSDASTRTPSDSSASSDYTEGENNQHLDSSHGLYSTKRNESGAKSIGKSNSSGSKNVTMDVILRSSSRFKKAKLTASQSELNDTESQHFQGTAPLKMLPHSDLILLSWFRAGCRILYRTQRIAGVTTKSRSCPRQDRRSSRSRRWLRRWQYLLGKLTSFGSRMISGW* 1310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6678842 6691641 + Vvi1g588 Vvi1g588 769788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g588 1309 MobiDBLite consensus disorder prediction 402 450 - -
Vvi1g588 1309 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 14 106 IPR039218 -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 614 634 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 211 287 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 668 697 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 536 556 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 1108 1131 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 1077 1102 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 368 509 - -
Vvi1g588 1309 Coils Coil 581 601 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 709 733 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 941 1008 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 258 276 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 868 883 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 301 338 - -
Vvi1g588 1309 PANTHER - 14 106 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 960 981 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 786 884 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 312 338 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 847 862 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 1063 1199 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 1145 1199 - -
Vvi1g588 1309 MobiDBLite consensus disorder prediction 942 959 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g588 - - - vvi:104879533 2333.52
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g588 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1102 Cone19ag1090 . . . . . . . . . . . . . . . . . . Cma05g00059 . Car05g00049 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010056 0 4 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 3 1 1 31