Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g589 ATGTCGACTTTCTTTGCATTTCACACTTCTCCGCTCCACCTCTCTCCCTTCCCTCACCGGACCCAAATTCGGACCCCTATTCTTCATCCCTCTCACTTTCCGGGGTTACCTAATCGCCGCTCACTCGGTGTGGCCAGGTTCGGATTCAGGCCTTTCCATTCCGATGGTGCTGACGCTGTTATTGGGGACCTCTTTGGTAGAGTGGAAACCCTTCTTTATACGATTGCCGATGCCGCCGTGTCGGCTAGTGACGGTAAACAGAGCGGCGACTGGCTTTCTGGGATTACTAATTATATGGAGACTGTTTTGAAGGTTTTGAAGGGTGGCCTTTCTACTTTACATGTTCCCTATGCCTATGGTTTTGCTATTATACTTCTCACTGTTCTTGTTAAGGCTGCCACATTTCCTCTGACAAAGAAGCAGGTAGAATCTGCAATGGCTATGCGATCTTTGCAGCCTCAAATAAAGGCTATTCAGCAACGATATGCCGGAGATCAGGAGAGAATTCAACTTGAAACTGCTCGACTGTATAAACTAGCTGGCATAAACCCATTAGCAGGATGCCTGCCAACACTGGCCACAATACCAGTATGGATTGGCCTTTATAGAGCCCTTTCCAATGTGGCAGATGAGGGACTTCTAACAGAAGGCTTCTTTTGGATACCCTCCCTTTCTGGTCCAACTACGATTGCTGCTCGGCAAAATGGCAGTGGTATCTCTTGGCTTTTCCCTTTTGTAGATGGTCATCCACCCCTTGGATGGTCGGATACCTTGGCCTATCTTGTCTTGCCTATGTTGCTGATTGTTTCACAGTACATATCTGTCCAAATCATGCAATCATCACAGAGTAATGATCCAAGCCTGAAGACTTCTCAAGCACTGACCAAGTTTCTCCCCTTAATGATCGGCTATTTTGCCCTTTCAGTTCCATCTGGGTTAAGCCTTTATTGGTTCACAAATAATATCTTGAGCACAGCGCAACAAGTATGGCTTCAAAAGTTAGGAGGTGCACAAATTCCAGTGAAGCAGTTCAGTGATGATATTGAAAAGGAGGAGCTATCCCAGATTCAGAAACCTGTTTTTGAAATAAACTCAACCAAAAAGGAGCCCAAACAAACAGAAAAGTTAACATCAGAGGGGCTACGGCCTGGTGAAAGATTTAAACAGATTAAGGAGCAAGAGGCAAGGAGAAGGCAGCAAAGGGAAGAAGAAAAGACGAAAGCTGAAGAGGCAGCAGCTAATAGAATACCAACAACAAATGGAGGCTATAAGAATGAGGCTAATTCAACTAAAAGGGAATATAGGACTGGAGGTGATTTAGTTGATGGTGGGAATGACAGTTTTCAGTCCTTAACTACCACTCACAATTCATCCAATATTGAGGTAGTGGTAAATGATGAGCTTTCTAATGAGGACTCAAAAGATGAACAGAAGATGTATGTCACCAGGACAGAAAGCAGTGAAAACTCTGTTAATTATGAGGTAGATGTGAGGGATGAGCAGCATATTAATGGAAAGCTAGAAAAGGAAGTGATTGAAGTATGTACGGATAACAAACCTTCTGGGGAAGAGACATTGCAACCGAGAAGAGAGCAACCCACTGAAAGGGAAGAAGTATAG 1620 44.32 MSTFFAFHTSPLHLSPFPHRTQIRTPILHPSHFPGLPNRRSLGVARFGFRPFHSDGADAVIGDLFGRVETLLYTIADAAVSASDGKQSGDWLSGITNYMETVLKVLKGGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQIKAIQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLSGPTTIAARQNGSGISWLFPFVDGHPPLGWSDTLAYLVLPMLLIVSQYISVQIMQSSQSNDPSLKTSQALTKFLPLMIGYFALSVPSGLSLYWFTNNILSTAQQVWLQKLGGAQIPVKQFSDDIEKEELSQIQKPVFEINSTKKEPKQTEKLTSEGLRPGERFKQIKEQEARRRQQREEEKTKAEEAAANRIPTTNGGYKNEANSTKREYRTGGDLVDGGNDSFQSLTTTHNSSNIEVVVNDELSNEDSKDEQKMYVTRTESSENSVNYEVDVRDEQHINGKLEKEVIEVCTDNKPSGEETLQPRREQPTEREEV* 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6701542 6712881 + Vvi1g589 Vvi1g589 769789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g589 539 MobiDBLite consensus disorder prediction 364 411 - -
Vvi1g589 539 MobiDBLite consensus disorder prediction 443 466 - -
Vvi1g589 539 Coils Coil 390 411 - -
Vvi1g589 539 MobiDBLite consensus disorder prediction 515 539 - -
Vvi1g589 539 TIGRFAM yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 119 333 IPR028055 -
Vvi1g589 539 Pfam 60Kd inner membrane protein 119 333 IPR001708 GO:0016021|GO:0032977
Vvi1g589 539 MobiDBLite consensus disorder prediction 467 482 - -
Vvi1g589 539 MobiDBLite consensus disorder prediction 363 492 - -
Vvi1g589 539 PANTHER OXA1 34 455 IPR001708 GO:0016021|GO:0032977
Vvi1g589 539 PANTHER BNAA09G28180D PROTEIN 34 455 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g589 K03217 - vvi:100256113 1018.07