Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g59 ATGTATACAAAAAGCACGAACCGTATCTTCACCCTCCAGGGTCTTCCCTTCTCATATCCTCTTTCGATCAAAGTCCGATTCTGTTCGGTTTCGAATCTCCGTTCCCAATCCTTAGATCGCCTTGATCCGTGGTGTATTTGGCATCGAATTTCATTATATTTTGTTACCCTCTCCTATTTGGTTCAAATTTTGTTGATTTTTAAGATCTGTCGAGCTTTAGGGTTTCGAGGTGTTCAAACTTTAATTCGATATAAATTTCTTAGGGTTTTGGTTAAGATGGGACTCAAACGGTCTTTTGAAAATGAGGAGTTTCAGGAGCTTCCTTTTAAGAACATGAAATGTGTTGAGTCTAGAGATAAGCTGGCCTCCTTTGGAGAAATTGTTCCATGTAAAGATGCCCCTCAGAAACCTGATATTTCAGATGAATGCAGCTTTTATAAGTTTCAATGTGGTACAGAGGGGGTTGAAAATGGAGTCTCAGTTTTAGATGACAAAGGGTTTGAGATCAGCGCTCCCTTGTCGTGCAATGGTTCAAGTGAGGAAGATGGTAGGTCTGTGGCAGCTGCTTACTCATCCCTCTCTCCAGAATATTTTGAATCCTACCTCCCACGGAGAACAGTAGCACAGTTTGAGGATATATATTCTTCTTTGTTGGATTGTTCTCCTAGAAGACAAGTTCCTGTTGGACCAGATCATCAAGCAAATGTTCCAGTATGGAGCCTGCAGAAAGTCAAAAACAGATTAGATAAGTTAGAGACCTCTAATCGCTACATTTCCTCATCACATCCATCTATGGAGGAGGAAGATCAGAAGACGAAGCATGTGTGCAAGCTCTGCAACAAGAGGTACCCTTCTGGGAAGTCCTTGGGGGGTCACATGAGGTCTCATATGATTGGGAATTCAGCTGAAGCTGCAGAGAGAAAGAAAATTTCATCTTTGAATGGTGGGAGAAGCAGCAAGAAGGAGAGTGGTTCACAGCAAGAGAATAAACCACAAGAGCAGCAAGAGTTGGCTATTTGTTTGATGATGCTGTCTAGGGATTCTGGGCATTGGGGTGGTTTGAATTCGCTTTACGATTTGAGTAAGAGAGCTAAGAATGATTCTTACTCAGAAGAGAATGTTCGGAAGAGAAGCAAGTATCAATGTCTGACTTGTAACAAGACCTTTCACTCTCACCAGGCTCTTGGGGGTCACAGAGCCAACCATAAAAGGAAGCTAGCTCGATTTGGCAGTGGAAAAACCCCAATTGCTCAGGATTTGTCTGGCAAAGCTGAGAAAAAGATCGGGTCAAGGAAAAGCAATGGGCACATGTGCCCAATCTGCTTCAAAGTTTTCCGATCAGGACAAGCTTTAGGTGGTCATAAGAAGTCCCATTTTGTAGGAGTTTGTGAAGACGAAAACAGTAGGACTTTAGTAATCAAGCAAGAGCCTCTTGAGATTCCTGGTCTCATTGATCTTAATCTTCCTGCTCCTATTGAGGAAGAAGCTAATGAGCATGTTGGGGCATCTATACTGTGCAGGCTCTGTTTATATTGCAGTTTCAAGGAACAAGGGCTTCTAGTTTCACTTTTAGTCCCTTTTTTCAATTCAATCTTTTATGTGTTTCTAAGTTTGTGTCTGACTATTGAAGTGTTTTTCTCATTTTCTGCCTGCTTTTCTTGTTAG 1665 41.86 MYTKSTNRIFTLQGLPFSYPLSIKVRFCSVSNLRSQSLDRLDPWCIWHRISLYFVTLSYLVQILLIFKICRALGFRGVQTLIRYKFLRVLVKMGLKRSFENEEFQELPFKNMKCVESRDKLASFGEIVPCKDAPQKPDISDECSFYKFQCGTEGVENGVSVLDDKGFEISAPLSCNGSSEEDGRSVAAAYSSLSPEYFESYLPRRTVAQFEDIYSSLLDCSPRRQVPVGPDHQANVPVWSLQKVKNRLDKLETSNRYISSSHPSMEEEDQKTKHVCKLCNKRYPSGKSLGGHMRSHMIGNSAEAAERKKISSLNGGRSSKKESGSQQENKPQEQQELAICLMMLSRDSGHWGGLNSLYDLSKRAKNDSYSEENVRKRSKYQCLTCNKTFHSHQALGGHRANHKRKLARFGSGKTPIAQDLSGKAEKKIGSRKSNGHMCPICFKVFRSGQALGGHKKSHFVGVCEDENSRTLVIKQEPLEIPGLIDLNLPAPIEEEANEHVGASILCRLCLYCSFKEQGLLVSLLVPFFNSIFYVFLSLCLTIEVFFSFSACFSC* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 609374 618213 + Vvi1g59 Vvi1g59 769259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g59 554 Pfam C2H2-type zinc finger 380 404 - -
Vvi1g59 554 Pfam C2H2-type zinc finger 274 297 - -
Vvi1g59 554 Pfam C2H2-type zinc finger 436 458 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 324 365 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 265 327 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 368 499 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 324 365 - -
Vvi1g59 554 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Vvi1g59 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Vvi1g59 554 SUPERFAMILY beta-beta-alpha zinc fingers 274 402 IPR036236 -
Vvi1g59 554 MobiDBLite consensus disorder prediction 301 333 - -
Vvi1g59 554 SMART c2h2final6 380 402 IPR013087 -
Vvi1g59 554 SMART c2h2final6 436 458 IPR013087 -
Vvi1g59 554 SMART c2h2final6 274 296 IPR013087 -
Vvi1g59 554 Gene3D Classic Zinc Finger 377 458 - -
Vvi1g59 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 380 407 IPR013087 -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 265 327 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 368 499 - -
Vvi1g59 554 ProSitePatterns Zinc finger C2H2 type domain signature. 382 402 IPR013087 -
Vvi1g59 554 ProSitePatterns Zinc finger C2H2 type domain signature. 438 458 IPR013087 -
Vvi1g59 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g59 Vvi17g613 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14522 PF13912 zf-C2H2_6 9.60E-07 CL0361 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g59 - - vvi:100250913 347.821