Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g59 ATGTATACAAAAAGCACGAACCGTATCTTCACCCTCCAGGGTCTTCCCTTCTCATATCCTCTTTCGATCAAAGTCCGATTCTGTTCGGTTTCGAATCTCCGTTCCCAATCCTTAGATCGCCTTGATCCGTGGTGTATTTGGCATCGAATTTCATTATATTTTGTTACCCTCTCCTATTTGGTTCAAATTTTGTTGATTTTTAAGATCTGTCGAGCTTTAGGGTTTCGAGGTGTTCAAACTTTAATTCGATATAAATTTCTTAGGGTTTTGGTTAAGATGGGACTCAAACGGTCTTTTGAAAATGAGGAGTTTCAGGAGCTTCCTTTTAAGAACATGAAATGTGTTGAGTCTAGAGATAAGCTGGCCTCCTTTGGAGAAATTGTTCCATGTAAAGATGCCCCTCAGAAACCTGATATTTCAGATGAATGCAGCTTTTATAAGTTTCAATGTGGTACAGAGGGGGTTGAAAATGGAGTCTCAGTTTTAGATGACAAAGGGTTTGAGATCAGCGCTCCCTTGTCGTGCAATGGTTCAAGTGAGGAAGATGGTAGGTCTGTGGCAGCTGCTTACTCATCCCTCTCTCCAGAATATTTTGAATCCTACCTCCCACGGAGAACAGTAGCACAGTTTGAGGATATATATTCTTCTTTGTTGGATTGTTCTCCTAGAAGACAAGTTCCTGTTGGACCAGATCATCAAGCAAATGTTCCAGTATGGAGCCTGCAGAAAGTCAAAAACAGATTAGATAAGTTAGAGACCTCTAATCGCTACATTTCCTCATCACATCCATCTATGGAGGAGGAAGATCAGAAGACGAAGCATGTGTGCAAGCTCTGCAACAAGAGGTACCCTTCTGGGAAGTCCTTGGGGGGTCACATGAGGTCTCATATGATTGGGAATTCAGCTGAAGCTGCAGAGAGAAAGAAAATTTCATCTTTGAATGGTGGGAGAAGCAGCAAGAAGGAGAGTGGTTCACAGCAAGAGAATAAACCACAAGAGCAGCAAGAGTTGGCTATTTGTTTGATGATGCTGTCTAGGGATTCTGGGCATTGGGGTGGTTTGAATTCGCTTTACGATTTGAGTAAGAGAGCTAAGAATGATTCTTACTCAGAAGAGAATGTTCGGAAGAGAAGCAAGTATCAATGTCTGACTTGTAACAAGACCTTTCACTCTCACCAGGCTCTTGGGGGTCACAGAGCCAACCATAAAAGGAAGCTAGCTCGATTTGGCAGTGGAAAAACCCCAATTGCTCAGGATTTGTCTGGCAAAGCTGAGAAAAAGATCGGGTCAAGGAAAAGCAATGGGCACATGTGCCCAATCTGCTTCAAAGTTTTCCGATCAGGACAAGCTTTAGGTGGTCATAAGAAGTCCCATTTTGTAGGAGTTTGTGAAGACGAAAACAGTAGGACTTTAGTAATCAAGCAAGAGCCTCTTGAGATTCCTGGTCTCATTGATCTTAATCTTCCTGCTCCTATTGAGGAAGAAGCTAATGAGCATGTTGGGGCATCTATACTGTGCAGGCTCTGTTTATATTGCAGTTTCAAGGAACAAGGGCTTCTAGTTTCACTTTTAGTCCCTTTTTTCAATTCAATCTTTTATGTGTTTCTAAGTTTGTGTCTGACTATTGAAGTGTTTTTCTCATTTTCTGCCTGCTTTTCTTGTTAG 1665 41.86 MYTKSTNRIFTLQGLPFSYPLSIKVRFCSVSNLRSQSLDRLDPWCIWHRISLYFVTLSYLVQILLIFKICRALGFRGVQTLIRYKFLRVLVKMGLKRSFENEEFQELPFKNMKCVESRDKLASFGEIVPCKDAPQKPDISDECSFYKFQCGTEGVENGVSVLDDKGFEISAPLSCNGSSEEDGRSVAAAYSSLSPEYFESYLPRRTVAQFEDIYSSLLDCSPRRQVPVGPDHQANVPVWSLQKVKNRLDKLETSNRYISSSHPSMEEEDQKTKHVCKLCNKRYPSGKSLGGHMRSHMIGNSAEAAERKKISSLNGGRSSKKESGSQQENKPQEQQELAICLMMLSRDSGHWGGLNSLYDLSKRAKNDSYSEENVRKRSKYQCLTCNKTFHSHQALGGHRANHKRKLARFGSGKTPIAQDLSGKAEKKIGSRKSNGHMCPICFKVFRSGQALGGHKKSHFVGVCEDENSRTLVIKQEPLEIPGLIDLNLPAPIEEEANEHVGASILCRLCLYCSFKEQGLLVSLLVPFFNSIFYVFLSLCLTIEVFFSFSACFSC* 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 609374 618213 + Vvi1g59 Vvi1g59 769259

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g59 554 Pfam C2H2-type zinc finger 380 404 - -
Vvi1g59 554 Pfam C2H2-type zinc finger 274 297 - -
Vvi1g59 554 Pfam C2H2-type zinc finger 436 458 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 324 365 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 265 327 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 368 499 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 324 365 - -
Vvi1g59 554 ProSitePatterns Zinc finger C2H2 type domain signature. 276 296 IPR013087 -
Vvi1g59 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 436 458 IPR013087 -
Vvi1g59 554 SUPERFAMILY beta-beta-alpha zinc fingers 274 402 IPR036236 -
Vvi1g59 554 MobiDBLite consensus disorder prediction 301 333 - -
Vvi1g59 554 SMART c2h2final6 380 402 IPR013087 -
Vvi1g59 554 SMART c2h2final6 436 458 IPR013087 -
Vvi1g59 554 SMART c2h2final6 274 296 IPR013087 -
Vvi1g59 554 Gene3D Classic Zinc Finger 377 458 - -
Vvi1g59 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 380 407 IPR013087 -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 265 327 - -
Vvi1g59 554 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 368 499 - -
Vvi1g59 554 ProSitePatterns Zinc finger C2H2 type domain signature. 382 402 IPR013087 -
Vvi1g59 554 ProSitePatterns Zinc finger C2H2 type domain signature. 438 458 IPR013087 -
Vvi1g59 554 ProSiteProfiles Zinc finger C2H2 type domain profile. 274 296 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g59 - - - vvi:100250913 347.821
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g59 Vvi17g613 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g59 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02400 Cam05g2576 Cec05g2610 Cco05g2648 Clacu05g2579 Cmu05g2433 Cre05g2550 . Cone19ag0908 Cone6ag0540 Cone9ag0550 Lsi04g00370 . . Cme10g00366 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005309 1 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14522 PF13912 zf-C2H2_6 9.60E-07 CL0361 Vvi TF