Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g591 ATGGCAATTCCTCTCTCTGTTCTTCTCTTCCTCCTGCCTCTTCTGTCTCCAACCTTCATTTCCTCTTCGCCGGTTCAAGATCCTGAGCTAGTAGTAGAAGAAGTGCACAAGAGGATCAATGCTTCAAGGAGGAACTTGGGGTTCCTGTCTTGCGGAACCGGCAACCCCATCGACGACTGCTGGCGGTGCGACCCAGATTGGGAAAAGAACCGCCAGGGTTTGGCTGACTGCTCAATCGGGTTTGGGAGGCATGCCATAGGCGGAAGAGATGGGGAGATTTACGTGGTGACAGACTCAGGGGACTATGACCCTGTGAACCCTAAGCCTGGCACTCTGAGATATGCAGTGATCCAAAAGGAGCCATTGTGGATCATTTTCCAGAGGGATATGGTGATCAAACTGAAGGAAGAGCTGATCATGAACTCGTTCAAGACCATCGACGGAAGAGGCGCCAGCGTCCACATTGCGGGAGGGCCGTGCATTACTATCCAGTACGTGACCAACATTATCATTCATGGCCTCAACATACACGACTGCAAGCAAGGAGGAAACGCCAATGTGAGGGACTCCCCCGACCATTACGGGTGGAGGACGATATCAGACGGGGATGGGGTGTCCATATTCGGGGGAAGCCATGTTTGGGTGGACCACTGCTCTCTCTCCAACTGCAATGACGGACTGGTGGATGCCATCCATGGATCCACGGCCATCACCATCTCCAACAACTACATGACCCATCATAACAAGGTCATGCTATTGGGCCACAGTGATTCCTATACTCAAGACAAGAACATGCAGGTTACCATTGCCTTCAACCATTTTGGAGAAGGTCTCGTCCAGAGAATGCCCAGATGTCGACACGGCTATTTTCATGTGGTGAATAACGACTACTCGCACTGGGAAATGTACGCTATTGGGGGAAGCGCGGAGCCTACAATTAACAGCCAAGGCAATAGATTTCTTGCTCCTGATGACAGATTCAGCAAGGAGGTAACCAAACATGAGGATGCACCACAGAGCCAATGGAAGAATTGGAATTGGAGATCAGAAGGAGATTTATTGTTAAATGGTGCCTTCTTCACAGCATCAGGGGCCGGAGCTTCTTCTAGTTACGCCAAGGCTTCGAGTTTGGGGGCAAGACCCTCATCTCTTATCACCACTATCACAAATGGGGCTGGTGCACTCAACTGCAAGAAAGGCAAGCGTTGCTGA 1212 50.83 MAIPLSVLLFLLPLLSPTFISSSPVQDPELVVEEVHKRINASRRNLGFLSCGTGNPIDDCWRCDPDWEKNRQGLADCSIGFGRHAIGGRDGEIYVVTDSGDYDPVNPKPGTLRYAVIQKEPLWIIFQRDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNANVRDSPDHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLVDAIHGSTAITISNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYSHWEMYAIGGSAEPTINSQGNRFLAPDDRFSKEVTKHEDAPQSQWKNWNWRSEGDLLLNGAFFTASGAGASSSYAKASSLGARPSSLITTITNGAGALNCKKGKRC* 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6744492 6746449 + Vvi1g591 Vvi1g591 769791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g591 403 PANTHER PECTATE LYASE 7 400 - -
Vvi1g591 403 SUPERFAMILY Pectin lyase-like 38 397 IPR011050 -
Vvi1g591 403 Pfam Pectate lyase 136 320 IPR002022 -
Vvi1g591 403 PANTHER PECTATE LYASE 18-RELATED 7 400 IPR045032 GO:0030570
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 77 94 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Vvi1g591 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Vvi1g591 403 Gene3D - 54 396 IPR012334 -
Vvi1g591 403 SMART amb_all 129 326 IPR002022 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g591 Vvi17g877 ECH
Vvi1g591 Vvi14g1252 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g591 K01728 - vvi:100242302 807.364