Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g592 ATGCTTCAGAGTCCTGACGGCGATGTCACCATCACCAATGATGGCGCGACAATATTGGAGCAGATGGATGTTGACAATCAAATTGCAAAACTGGTGGTTGAGTTATCTCGGAGCCAGGATTATGAAATTGGTGATGGTACAACTGGAGTTGTTGTTATGGCTGGTGCACTTCTAGAGCAGGCTGAACGGCTACTTGAACGAGGTATTCATCCTATTCGGATTTCAGAGGGCTATGAAATGGCTTCTAGGATTGCTGTTGAACATTTGGAGCATATTGCTCAAAAGTTTGATTTTGGCGTAACAAATATAGAACCTTTGGTTCAAACCTGCATGACTACTCTATCATCAAAGATTGTGAATCGATGCAAGCGCAGTTTGGCTGAGATTGCTGTCAAAGCTGTGATGTCAGTTGCTGATTTAGAGAGAAAGGATGTTAACTTAGATTTAATTAAAGTAGAGGGAAAAGTGGGGGGAAAGTTGGAAGATACTGAGCTAATCTATGGAATCCTTGTAGACAAGGATATGAGCCATCCACAAATGCCAAAGCAAATTGAAGATGCAAAGATAGCTATATTAACTTGTCCCTTTGAGCCACCTAAGCCAAAAACTAAGCATAAGGTTGACATTGATACTGTAGAAAAATTCCAGACTTTACGTCAACAAGAGCAGAAGTACTTTGATGACATGGTTCAAAAATGCAAGGATGTTGGTGCTACCTTGGTTATCTGTCAATGGGGGTTTGATGATGAAGCAAACCATTTGTTGTTGCACAGGAACTTGCCTGCTGTCCGATGGGTTGGTGGTGTAGAGTTAGAGTTGATAGCTATAGCAACAGGTGGAAGAATTGTGCCAAGGTTCCAAGAATTGACACAAGAAAAGCTGGGGAAGGCTGGTTTGGTTCGTGAAAAATCATTTGGTACCACTAAAGATCGAATGCTGTATATTGAACACTGTGCAAATTCAAGGGCTGTAACTATATTTATTCGTGGTGGTAACAAAATGATGATAGAGGAGACAAAGCGTAGCATCCATGATGCGTTGTGTGTGGCTAGAAACCTCATTCGCAGCAATTCTATTGTGTATGGTGGTGGCTCTGCTGAGATTTCTTGCTCAATTGCTGTAGAGGCAGCTGCTGATAGATATCCAGGAGTTGAGCAGTATGCTATCAGAGCATTTGGAGATGCTTTGGATTCAATCCCCATGGCGCTTGCTGAGAATAGTGGCCTCCAACCCATTGAAACACTATCAGCAGTGAAGTCTCAGCAAATTAAGGAGGACAATCCCTATTGTGGGATAGACTGCAATGATGTTGGCACAAATGACATGCAAGAGCAAAATGTCTTTGAGACTCTGATTGGGAAGCAGCAGCAGATCTTGCTAGCAACACAAGTTGTCAAGATGATTCTAAAGATCGATGATGTCATCAGCCCCTCTGAATACTGA 1443 42.34 MLQSPDGDVTITNDGATILEQMDVDNQIAKLVVELSRSQDYEIGDGTTGVVVMAGALLEQAERLLERGIHPIRISEGYEMASRIAVEHLEHIAQKFDFGVTNIEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVMSVADLERKDVNLDLIKVEGKVGGKLEDTELIYGILVDKDMSHPQMPKQIEDAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLLHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTQEKLGKAGLVREKSFGTTKDRMLYIEHCANSRAVTIFIRGGNKMMIEETKRSIHDALCVARNLIRSNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFGDALDSIPMALAENSGLQPIETLSAVKSQQIKEDNPYCGIDCNDVGTNDMQEQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6748930 6767400 - Vvi1g592 Vvi1g592 769792

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g592 480 PANTHER CHAPERONIN 1 477 IPR017998 GO:0140662
Vvi1g592 480 ProSitePatterns Chaperonins TCP-1 signature 3. 39 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi1g592 480 PRINTS Tailless complex polypeptide 1 (chaperone) signature 9 27 IPR017998 GO:0140662
Vvi1g592 480 PRINTS Tailless complex polypeptide 1 (chaperone) signature 39 58 IPR017998 GO:0140662
Vvi1g592 480 PRINTS Tailless complex polypeptide 1 (chaperone) signature 325 347 IPR017998 GO:0140662
Vvi1g592 480 PRINTS Tailless complex polypeptide 1 (chaperone) signature 359 371 IPR017998 GO:0140662
Vvi1g592 480 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 1 477 IPR012718 GO:0005524|GO:0006457|GO:0051082
Vvi1g592 480 Gene3D - 95 357 IPR027410 -
Vvi1g592 480 Gene3D - 1 475 IPR027413 -
Vvi1g592 480 ProSitePatterns Chaperonins TCP-1 signature 2. 11 27 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Vvi1g592 480 Pfam TCP-1/cpn60 chaperonin family 1 476 IPR002423 GO:0005524
Vvi1g592 480 SUPERFAMILY GroEL-intermediate domain like 101 356 IPR027410 -
Vvi1g592 480 SUPERFAMILY GroEL apical domain-like 162 330 IPR027409 -
Vvi1g592 480 CDD TCP1_epsilon 1 476 IPR012718 GO:0005524|GO:0006457|GO:0051082
Vvi1g592 480 PANTHER BNAA08G19100D PROTEIN 1 477 - -
Vvi1g592 480 SUPERFAMILY GroEL equatorial domain-like 1 476 IPR027413 -
Vvi1g592 480 Gene3D GroEL 167 321 IPR027409 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g592 K09497 CCT5; T-complex protein 1 subunit epsilon - vvi:100264594 939.488
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g592 . . . . . Bpe10g00853 Bma14g01835 Bma15g00232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00834 Blo11g01032 Bda07g01650 . . . . . . . . . Cma05g00055 . Car05g00043 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004994 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 0 1 1 1 1 2 40