Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g593 ATGCCATTTCAGGGAGGTGGAGCCATTTCTGCACTTGCAGATGATGAGCTGATGGGGGAAGACGATGAATATGATGATCTTTACAATGATGTTAATGTTGGAGAGGGTTTTCTGCAGATGCACCGATCTGAAGCACCAGCACCATCAGGTGTTATGGCTGGTGGGCCGTTCCAAGCTCATAAAACCGATGTCCCACCACAAAAACTAGAAGCTGGCACTTCACAGGGGCTGATCATCCCAGGAGTTTCAATTGAAGGGAAGTATTCTAATCCCCATTTCCATGAGAAGAAGGAAGGGCCAATGGCTGTTAAGGGGCCGGAAATGGGATCTACTAGCCACTTAGATGGGCCTTCAGTTTCACAGAAGGGAAGGGTTTTGGAGATGACTCATGATACTCAAGTCAGAAATTTGGGATTTCAAGGATCGACTCCAATTCCCCAAAAGACTGGGGCTGAACCAAGTGATGTGCATGGAAAAATTGCTAATGAGTCCACACCAGTCCTGAATTCTGGAACTGGTGGTCCTAGAGCTGTTCCACAGATGTTGAGTAACCAAATGGGAATGAATGTGAATGTGAACCGTCCAATGGTTAATGAAAATCAAATCCGGCCAGCTGTGGATAATGGTGCAACCATGCTCTTTGTAGGAGAACTACATTGGTGGACAACTGATGCAGAACTTGAAAGTGTGTTATCTCAATATGGAAGGGTGAAGGAGATTAAGTTCTTTGATGAGAGAGCTAGTGGTAAATCCAAAGGCTATTGTCAAGTTGAGTTCTATGATGCTTCTGCTGCAGCCGCATTCTCAGGGAAGGAGGGAATACTCAACAGAGGCCCTGGGGGTCTTGCAGGTCCCACATTTGGAGGTCCTGCTGGTGGTTTGATGCATCCTCAGGGTATGATGGGTTCTGGATTTGATCCAACATATATGGGTCGAGGAGGTGCTTATGGAGGGTTCTCTGGTTCTGCTTTTCCTGGGATGGTACCTTCATTTCCAGCTGTTAATACAATGGGACTTGCAGGGGTGGCCCCTCATGTCAACCCTGCCTTCTTTGGCCGGGGAATGGCAGCCAATGGAATGGGAATGATGGGAGAGGAACATGGCCGAAGGACTAGGGAGTCAAGTTATGGTGGAGATGATGGTGCTTCTGACTATGGGTATGGAGAGGTGAACCATGAAAAAGTTGGAAGGTCAAATACTGCCTCCCGGGAAAAGGAAAGGGGTTCTGAGCGTGACTGGTCAGGGAACTCTGAGAGAAGGCATCAGGAGACGCTTGCCATCAGAGTGATGCTATGCTGTTCATCTTTCTTTGGCAGTTCTTATGAGACCCCACATTTATGTTCTCACTTCTCAGTTTCTCTTCATCAGAGTGCTACAGTGGATATATTATACTTTCTGATTTCTGTTGGCCCCACATACGGAGTGCGGCTTCCGGATGGCAAAAGGAGCAGAGTGGGCTACTCTTTGTTGTCTTGA 1476 47.49 MPFQGGGAISALADDELMGEDDEYDDLYNDVNVGEGFLQMHRSEAPAPSGVMAGGPFQAHKTDVPPQKLEAGTSQGLIIPGVSIEGKYSNPHFHEKKEGPMAVKGPEMGSTSHLDGPSVSQKGRVLEMTHDTQVRNLGFQGSTPIPQKTGAEPSDVHGKIANESTPVLNSGTGGPRAVPQMLSNQMGMNVNVNRPMVNENQIRPAVDNGATMLFVGELHWWTTDAELESVLSQYGRVKEIKFFDERASGKSKGYCQVEFYDASAAAAFSGKEGILNRGPGGLAGPTFGGPAGGLMHPQGMMGSGFDPTYMGRGGAYGGFSGSAFPGMVPSFPAVNTMGLAGVAPHVNPAFFGRGMAANGMGMMGEEHGRRTRESSYGGDDGASDYGYGEVNHEKVGRSNTASREKERGSERDWSGNSERRHQETLAIRVMLCCSSFFGSSYETPHLCSHFSVSLHQSATVDILYFLISVGPTYGVRLPDGKRSRVGYSLLS* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6772857 6781078 - Vvi1g593 Vvi1g593 769793

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g593 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 267 IPR000504 GO:0003723
Vvi1g593 491 Gene3D - 212 273 IPR012677 -
Vvi1g593 491 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 282 424 IPR034772 -
Vvi1g593 491 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 4 287 IPR034772 -
Vvi1g593 491 SMART rrm1_1 212 283 IPR000504 GO:0003723
Vvi1g593 491 MobiDBLite consensus disorder prediction 386 419 - -
Vvi1g593 491 CDD RRM_CFIm68_CFIm59 213 281 - -
Vvi1g593 491 SUPERFAMILY RNA-binding domain, RBD 195 267 IPR035979 GO:0003676
Vvi1g593 491 MobiDBLite consensus disorder prediction 94 119 - -
Vvi1g593 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 272 IPR000504 GO:0003723
Vvi1g593 491 MobiDBLite consensus disorder prediction 363 419 - -
Vvi1g593 491 PANTHER F3F19.21 PROTEIN 4 287 - -
Vvi1g593 491 PANTHER F3F19.21 PROTEIN 282 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g593 K14398 CPSF6_7; cleavage and polyadenylation specificity factor subunit 6/7 - vvi:100268141 548.125
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g593 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0068269 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1