Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g595 ATGAATCCGCTGTGCTGCATTGCTCCGGTTTCCATCGATCGGGACCGGGCCAACCCGGCTCAAGTTTCGTCGATCAATGCTGAGTCGGATGCGGTGAGCCACGATGTTGAGGACGCTTTTCCGGAGGCCAGGGACGGGAAGGTGTTCGGTGCAGGTGGAGGCGTGGCTGGGATTCTCTACAAGTGGGTGAATTACGGCAAGGGTTGGAGGTCGAGGTGGTTCGTGCTTGAAGATGGGGTTCTTTCGTATTACAAGATTCATGGTCCGGACAAGATTTTGATGAGTCCAGCAAGGGAGAAGAGCTTGAAGGTAATTGGAGAGGATTCATTGAGGTGTATGAAGAAGAACAGTTGGAGTAATCATCACCGTCTTGCTGGGTCTGCGAAGCAGTGGAAGCCGTTTGGGGAGATTCATTTGAAGGTGTCCTCAATTCGTGCAAGCAAATCAGATGATAAAAGGCTGTCCATATTCACGGGAACAAAAACTCTTCACTTGCGTTGCATATCTAGGGAGGATAGATCTGCATGGATTGAGGCACTGCAGGCTGCTAAAGATCTTTTCCCTAGAGTTTTGACAAGCAGTGATTTTGCACCATCTGAAGATATTGTTGTTTCAACTGAGAAGCTACGTTTACGATTAGTGCAGGAAGGTGTTGGTGAGGTAGTCATTAAAGACTGCGAATCTATCATGCTTTCCGAACTCTCTGAGCTGCAAAATCAGTTTAAGGCTCTTCAACGGAAGCATATTATCCTGCTAGATACATTGAGACAGTTGGAGACAGAGAAAATAGAACTGGAAACTACTGTAGTGGATGAAACAAAGGAACGGGAGTCATACTGTGGCCAAGGAAATAGAAGATTCAGTGACTTCTATTCTATCATGTCAGAGGGCAGTGGAAGTGATTCTGATGCAGATAATGAAAGTCAGGATGGAGTAGATGTTGAAACTGATGAAGATGATATAGTATTTTTCGACACAAATGATTTTTTGTCTTCAGAATCTCTTAGAAGTGCTTCTTACAGGAGCAGAGAAACCTTGGGAAATGGGACTTTGATAAATAATAGAGATCCTTTCCTTTCTGATCATTTGCATGATGAGATGGAGATCAGGACAGTTGAATATCCATACATCAAAAGAAGGGATAGTTTGCCAGAACCAAAGGAGAAAGAGAAGCCAGTCGGTCTATGGTCAATAATCAAGGATAATATTGGAAAGGACCTGTCTGGAGTTTGTCTCCCTGTTTACTTCAATGAACCACTTTCTTCATTGCAGAAGTGCTTTGAAGATTTGGAGTATTCCTACTTGGTTGATCGAGCAATGGAATGGGGAAAGCAGGGAAATGACTTGATGAGAATTCTGAATATTGCCGCTTTTGCTGTATCTGGCTATGCATCAACAGAAGGTCGGCAGTGCAAACCCTTTAATCCTCTCCTTGGGGAAACCTATGAGGCTGATTATCCTGATAAAGGTCTTCGCTTCTTCTCTGAAAAAGTGAGTCACCACCCAATGATTGTTGCTTGCCACTGTGAGGGGAGAGGCTGGAAGTTCTGGGCAGACTCTAATCTCAAAGGGAAGTTCTGGGGCCGTTCCATTCAGCTTGATCCTGTGGGTGTCCTTACCCTGCAGTTTGATGATGATGAGACATTCCAATGGAGCAAAGTCACTACTTCTATATACAATATCATACTAGGTAAAATCTATTGTGATCACTATGGAACCATGCGCATCAAGGGCAGTGGAAATTACTCCTGTAAGCTGAAGTTCAAGGAGCAGTCTATTATAGACCGAAATCCACATCAGGTTCATGGATTTGTGCAAGATAATCGAACTGGAGAGAAGGTAGCTATGTTGGTGGGGAAATGGGATGAGGCAATGTATTATGTGTTGGGAGATCCAACAACAAAGCCAAAAGGGTATGATCCAATGACAGAAGCTGTGTTGCTGTGGGAAAGAGAAAAATTTGTTACCAAGACAAGATACAACCTCACACCTTTTGCAATATCTTTAAATGAACTGACACCAGGCTTATTGGAAAAATTGCCACCTACTGACTCAAGGCTGCGGCCAGATCAGAGGCATTTGGAGAATGGAGAATATGAGCTGGCAAATGCGGAGAAGCTCAGACTCGAACACTTGCAGAGACAGGCAAGAAAGTTGCAGGAAAGGGGGTGGCAGCCTAGATGGTTCCGTAAGGACAAGGAGGATGGTTGTTACCGTTACATAGGTGGATACTGGGAAACAAGAGAGAAAAGGTACTGGGATGGGATTCCAAATATATTTGGCCAGGGTAGTGATTCACCCTCATGTTTAATAGAGGAGTAA 2322 44.36 MNPLCCIAPVSIDRDRANPAQVSSINAESDAVSHDVEDAFPEARDGKVFGAGGGVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPAREKSLKVIGEDSLRCMKKNSWSNHHRLAGSAKQWKPFGEIHLKVSSIRASKSDDKRLSIFTGTKTLHLRCISREDRSAWIEALQAAKDLFPRVLTSSDFAPSEDIVVSTEKLRLRLVQEGVGEVVIKDCESIMLSELSELQNQFKALQRKHIILLDTLRQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSIMSEGSGSDSDADNESQDGVDVETDEDDIVFFDTNDFLSSESLRSASYRSRETLGNGTLINNRDPFLSDHLHDEMEIRTVEYPYIKRRDSLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRAMEWGKQGNDLMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFDDDETFQWSKVTTSIYNIILGKIYCDHYGTMRIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWEREKFVTKTRYNLTPFAISLNELTPGLLEKLPPTDSRLRPDQRHLENGEYELANAEKLRLEHLQRQARKLQERGWQPRWFRKDKEDGCYRYIGGYWETREKRYWDGIPNIFGQGSDSPSCLIEE* 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6819901 6830379 + Vvi1g595 Vvi1g595 769795

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g595 773 SUPERFAMILY Oxysterol-binding protein-like 389 761 IPR037239 -
Vvi1g595 773 Gene3D - 480 648 - -
Vvi1g595 773 Coils Coil 227 275 - -
Vvi1g595 773 Pfam Oxysterol-binding protein 395 749 IPR000648 GO:0008289
Vvi1g595 773 Gene3D - 54 187 IPR011993 -
Vvi1g595 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 20 764 - -
Vvi1g595 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 20 764 IPR000648 GO:0008289
Vvi1g595 773 SUPERFAMILY PH domain-like 56 185 - -
Vvi1g595 773 Pfam Pleckstrin homology domain 57 182 - -
Vvi1g595 773 Gene3D - 691 753 - -
Vvi1g595 773 ProSiteProfiles PH domain profile. 52 185 IPR001849 -
Vvi1g595 773 Coils Coil 702 722 - -
Vvi1g595 773 CDD PH_ORP_plant 58 190 - -
Vvi1g595 773 SMART PH_update 53 187 IPR001849 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g595 K20456 OSBP; oxysterol-binding protein 1 - vvi:100257862 1560.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g595 . . . . . . . Bma15g00230 . . . . . . Sed01g3038 . Cpe01g01580 Bhi07g01839 Tan04g0129 Cmetu09g0131 Lac13g0113 Hepe10g1564 . . Cla05g02620 Cam05g2807 Cec05g2843 Cco05g2875 Clacu05g2811 Cmu05g2659 Cre05g2775 Cone13ag1096 Cone19ag1086 . . Lsi04g00633 Csa05g02254 Chy10g00824 Cme10g00607 Blo06g00836 . . . . . . . . . . Cma04g01792 . Car04g01807 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010393 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32