Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g596 ATGAAGTGTGACCCAGAAGGTTACGAGTCCGAACTCCTCCTCCTCTACAGCCAATTCAACTCCTCCCTCGAGCTCTTCCAACAGCAAGCTGTCTTCACCTCCATCAGCGGCGTGGACACCGACCCCGCTGTCGCCAAGGACCTTGGCGACAGGGCCGTCTTCTTGTCTCACCTCACCCCATTTTACCCCAAACATCTCGCTGAGTTCCCCAAACAACTCGCTCAGTTCCTCCGCTCAACCGCTCGTTCGCTTCCATCGTCGCTTCGCTGCCATGTTGCTCAAGCCCTCATTCTTCTCATCAATCGGAAGATAGTTGATATTGGTGACACTCTTGCATTGTTCTTGGAGCTTCAAACTCTCGGTGATAGGGCTTTGAGAAAATTGGCATTTTCTCATGTTGTTCATAGTATCAAGAGAATGAACCAGAAGCATAAGAATGAGGCTCAGAATCGTGCACTTCAAAACATATTGTTTCCGATGCTACAGCAAGAGGATGAAGCACAAGCTAAGAGATCGCTTATCACACTTTGTGATCTTCATCGCAGAAAGGTGTGGTTTGATGATAGAACCGCCAATGCAGTCTGTACAGCATGTTTTCATTCATCATCGAGGATCATGATTGCTGCTTTATCCTTTCTTCTTGACTATGAAAAGATTGAAGATGATGATGACAGTGACGGTTCAAGCAGTGAAGATGAGACTCCCCAAAAGCCTCAAGTTGTCCTAAGTAAAGGGGATGTTTATAAGGCACACCATAAAGGTACACTTGCAAGCAAGAAGAAAAAAAAGGCAAAATTGCAGCGTGTGATTCGTAATATGAAAAGGAAGCAGCGCCTATCATCAGAAAAAGTGATTTCAAATAACTATTCACCACTTAACCATCTGAAAGATGCGCAGGGATTTTCTGAGAAACTATTCTCTCGTCTTCAAACATGCAATGAACGGTTTGAGGTTAAGATGATGATGTTGAAAGTAATTGCTCGAACAGTTGGGCTTCACCGGTTGATTTTACTAAATTTTTATCCTTTTCTCCAGAAATATGTTCAGCCCCATCAACGTGATGTCACAAATTTACTTGCAGCGGCAGTTCAGGCATGCCATGACATGGTGCCTCCTGATGCAGTTGAACCACTATTCAAACAAATCGTAAATCAGTTTGTACATGATCGTTCACGGACAGAGGCTATTGCTGTGGGACTGAATGTAGTAAGGGAAATATGTCTGCGCATACCTTTGTTGATGACGGAAGACTTGCTGCAAGACCTTGTTTTGTATAAGAAATCACATGAGAAAGCTGTTTCAACAGCAGCTCGTTCACTCATTACATTATTTAGAGAGATTTGCCCTTCTCTGCTGATTAAAAAAGATCGTGGACGACCTACTGACCCAAAGGCAAAGCCAAAAGCGTTTGGAGAAGTGAATGTTGTCAGTAGTGTTCCTGGTGCTGAGTTATTACAACATGATGATGATGATGATGATGATGATGATGTGAATGATGACAATTCTGATGAGACTGGATTCAGTGATTATGAAGATGGCAATAATATTACTGATGATGATTCTGTTGATGTCAGTGATGATGATGATGATGATGATGACAATGAGAGCGGCGGTAGTGGTGATGAGGATGATGATGATGAAGAAAAATCTAAAGCAAGGAAGAGGAAGGCTTTGGATTTTGAGGGACAATTGAATGCTGCTGATACTAGTCTTCGGGCTCTTAAGAGATTAGCAGGGGCAAAGATGGGGCATGCCCCATTGGACTCAACAGATGGTATTCTTTCTAATGAAGACTTCCAACGGATTAAAGACCTAAAGGCAAAGGAGGAAGCCAAATTTGCTTTGGCTCAGCATGGGTTGTTAAGGAAAGGCTCAGATGCAAAATCAACAGGTTTTAAGATTCCAACTTCTGATCAGCTGAGTGTTAAACGAGTGGATCCTGCTATGCTTGAGGTTAATATAAGGAAAAAGCTAAGTAAAGAGGAAAGATTGGAACTGGTGAGAGCAGGGAGAGAGGACAGAGGGAAGTACCAGGCCCGAGCTGCAGTGAAACAGAAGAAGACTGGTGGTTTGAGCAATCGGCAGAAGGAACACAAGAAGGCCATGCCTCTAGCTGCTAAGCGATCCAAGATACAAAAATCACGAGAGGTGAAAAGGAAACAACAGCGTCGTTCTGGTAAACAGTTTCGTGGGAGGAAAGCATGGAAGTGA 2211 43.6 MKCDPEGYESELLLLYSQFNSSLELFQQQAVFTSISGVDTDPAVAKDLGDRAVFLSHLTPFYPKHLAEFPKQLAQFLRSTARSLPSSLRCHVAQALILLINRKIVDIGDTLALFLELQTLGDRALRKLAFSHVVHSIKRMNQKHKNEAQNRALQNILFPMLQQEDEAQAKRSLITLCDLHRRKVWFDDRTANAVCTACFHSSSRIMIAALSFLLDYEKIEDDDDSDGSSSEDETPQKPQVVLSKGDVYKAHHKGTLASKKKKKAKLQRVIRNMKRKQRLSSEKVISNNYSPLNHLKDAQGFSEKLFSRLQTCNERFEVKMMMLKVIARTVGLHRLILLNFYPFLQKYVQPHQRDVTNLLAAAVQACHDMVPPDAVEPLFKQIVNQFVHDRSRTEAIAVGLNVVREICLRIPLLMTEDLLQDLVLYKKSHEKAVSTAARSLITLFREICPSLLIKKDRGRPTDPKAKPKAFGEVNVVSSVPGAELLQHDDDDDDDDDVNDDNSDETGFSDYEDGNNITDDDSVDVSDDDDDDDDNESGGSGDEDDDDEEKSKARKRKALDFEGQLNAADTSLRALKRLAGAKMGHAPLDSTDGILSNEDFQRIKDLKAKEEAKFALAQHGLLRKGSDAKSTGFKIPTSDQLSVKRVDPAMLEVNIRKKLSKEERLELVRAGREDRGKYQARAAVKQKKTGGLSNRQKEHKKAMPLAAKRSKIQKSREVKRKQQRRSGKQFRGRKAWK* 737
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6831273 6842487 - Vvi1g596 Vvi1g596 769796

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g596 736 Pfam SDA1 414 733 IPR007949 -
Vvi1g596 736 PANTHER HSDA/SDA1-RELATED 1 736 IPR027312 GO:0000055|GO:0042273
Vvi1g596 736 MobiDBLite consensus disorder prediction 221 242 - -
Vvi1g596 736 SUPERFAMILY ARM repeat 53 504 IPR016024 -
Vvi1g596 736 Coils Coil 256 279 - -
Vvi1g596 736 MobiDBLite consensus disorder prediction 486 545 - -
Vvi1g596 736 MobiDBLite consensus disorder prediction 690 704 - -
Vvi1g596 736 MobiDBLite consensus disorder prediction 670 736 - -
Vvi1g596 736 MobiDBLite consensus disorder prediction 705 736 - -
Vvi1g596 736 MobiDBLite consensus disorder prediction 546 561 - -
Vvi1g596 736 MobiDBLite consensus disorder prediction 484 562 - -
Vvi1g596 736 PANTHER PROTEIN SDA1 HOMOLOG 1 736 - -
Vvi1g596 736 Pfam NUC130/3NT domain 54 105 IPR012977 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g596 K14856 SDA1, SDAD1; protein SDA1 - zju:107428499 1004.59
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g596 Blo01g00379 . Bda01g02201 . Bpe13g00513 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0708 Cone12ag0686 . . . . . . . . . . Bma01g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007839 1 3 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 35