Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g598 ATGGGAGAGACGGGGACCTCTAGGTTTCTGGGAAACTTAGACCCAAGTGCGCAGGAGTTCAGGCCGAGGAACCCATATATCCAGAACCAGATGAGCTTGTCTCATTTGCTTGTCCCACTACCACCGCCGGCACGTGGGCTTATTGCAGGTCGTGCAGTTTGGGCTCAATTCATGATTCCAGTGAGCACTTGCATGCTGGACGACTATAATCAAGGAACTCTTGTGATTTTCAATTTGGACTCAGAGGTCTCCACCAGCAGTCTGAGGGACATATTCGAGACATTTGGGTCAATAAAGGAATTGAGAGAGACACCATTAAAGCGGCACCAGAGGTTTGTGGAGTTTTTTGATATCAGAGATGCAGCTAGGGCTCTTAGAGAAATGAATGGCAAGAAAATTCAAGGGAAACGTGTGGTAATAGAATTTAGTCGGCCAGGTGGTCATGGCTGGAGGTTCTTCAATGCCATTAAGAAAAGCTCACATTTCAATGTGCCTCCTCATTCTTATCTCTCTCAAACACATCATTCCACAAAAAAGTCCAATGTTGGTATAAACAAAAGGACTCAAAGAAATCGGCCGTGGAAGGGAAGACAGAAGAACATCGATTCCTGTTTTCTAATAAACGAGGATGCCAAAACGGAATCCCATTACAGAGATTCCAGAACAACTGTCATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTCCTAATGAACATGTTGGATAATCACTGCATTGACTGCAATAAGCAGGTTCCCGACGGAGGGGACCAACCATTGTCCTCCTATGATTTCATATACCTCCCCATCGATTTCAACAACAAGTGCAATGTGGGATATGGGTTCGTGAACATGACGTCCCCTCAGGCGACATGGAGGCTCTACAAGGCCTTTCATCTTCAATCTTGGAAGGTTTTCAACTCCACCAAAATCTGTGAAGTTACTTATGCTCGAATCCAGGGTTTGGAAGCATTGAAAGAGCACTTCAAGAACTCAAAGTTCCTGTGCGACACGAAGACATACCTACCAGTGGTGTTTTCACCGCCTCGAGATGGGAGACAACTGACAGAGCCTCAACCCATTGTTGGCAACAATAAGCTCATCATCGGTATCATCACCAATGACACTAAAGCTTCTGATGACAACGATGATGGTGATGAATGGGAGATGATGATGGACGGTCCTCATAGGCTGAATAATGGTGGTCACATCGAGTGTTTGTTGAGAATCAAATTTTATTTAATTTATGTACTATTTAATTGTCATTATTATTATTATTATATTAAGGAGTAA 1296 43.67 MGETGTSRFLGNLDPSAQEFRPRNPYIQNQMSLSHLLVPLPPPARGLIAGRAVWAQFMIPVSTCMLDDYNQGTLVIFNLDSEVSTSSLRDIFETFGSIKELRETPLKRHQRFVEFFDIRDAARALREMNGKKIQGKRVVIEFSRPGGHGWRFFNAIKKSSHFNVPPHSYLSQTHHSTKKSNVGINKRTQRNRPWKGRQKNIDSCFLINEDAKTESHYRDSRTTVMIKNIPNKYSQKLLMNMLDNHCIDCNKQVPDGGDQPLSSYDFIYLPIDFNNKCNVGYGFVNMTSPQATWRLYKAFHLQSWKVFNSTKICEVTYARIQGLEALKEHFKNSKFLCDTKTYLPVVFSPPRDGRQLTEPQPIVGNNKLIIGIITNDTKASDDNDDGDEWEMMMDGPHRLNNGGHIECLLRIKFYLIYVLFNCHYYYYYIKE* 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6863498 6866630 + Vvi1g598 Vvi1g598 769798

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g598 431 SMART rrm1_1 73 141 IPR000504 GO:0003723
Vvi1g598 431 Gene3D - 68 149 IPR012677 -
Vvi1g598 431 PANTHER TERMINAL EAR1-LIKE 1 176 380 - -
Vvi1g598 431 PANTHER TERMINAL EAR1-LIKE 1 37 162 - -
Vvi1g598 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 138 IPR000504 GO:0003723
Vvi1g598 431 MobiDBLite consensus disorder prediction 1 21 - -
Vvi1g598 431 CDD RRM3_EAR1_like 221 322 IPR034458 -
Vvi1g598 431 PANTHER RNA BINDING PROTEIN 37 162 - -
Vvi1g598 431 PANTHER RNA BINDING PROTEIN 176 380 - -
Vvi1g598 431 SUPERFAMILY RNA-binding domain, RBD 72 299 IPR035979 GO:0003676
Vvi1g598 431 Pfam RNA recognition motif 2 221 331 IPR007201 -
Vvi1g598 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 145 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g598 - - - vvi:100242186 716.072
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g598 Vvi14g1255 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g598 . . . . . . Bma14g01833 . . . . . . . Sed04g0552 . Cpe01g01579 Bhi07g01835 Tan04g0132 Cmetu10g1346 Lac13g0115 Hepe10g0058 . . Cla05g02618 Cam05g2805 Cec05g2841 Cco05g2873 Clacu05g2809 Cmu05g2657 Cre05g2773 . . . . Lsi04g00631 Csa05g02256 Chy10g00826 Cme10g00605 Blo06g00838 . Bda07g01649 . . . . . . . . Cma04g01791 Cma05g00053 Car04g01806 Car05g00041 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002936 2 2 1 1 1 1 3 1 1 2 2 1 3 2 2 3 1 0 3 1 2 2 2 2 2 2 3 2 2 2 54