Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g599 ATGAAGATGGAAAAGGTCATCCTCGTTGCTCTATCACTTGTTCTAGTGTTTGGTCTGGCTGAGAGCTTTGATTTTGATGAGAAGGATTTGGCTTCCGAGGAGAGTCTCTGGGACTTGTACGAGAGATGGAGGAGCTACCACACAGTTTCCCGTGACCTTGAAGAGAAGAATAAGCGCTTCAATGTGTTCAAAGAGAACACGAAGCATGTTCACAAGGTAAATCAGATGGACAAGCCTTACAAGTTGAAACTGAACAAGTTTGCAGACATGACCAACCATGAGTTCAGAAGCTCCTATGGTGGTTCTAAGGTTAAACATTATAGGATGTTACGTGGTGACCGGAGAGGCACTGGTGGATTCATGCATGAGAAAACCACCTATTTGCCACCATCTGTTGATTGGAGAAAGAAAGGAGCTGTCACTGGAATCAAAGATCAAGGCAAATGTGGAAGCTGCTGGGCATTTTCAACTGTAGTTGGCGTGGAGGGCATCAACCAAATCAAAACAAAGGAACTACTGTCTTTATCGGAGCAACAACTGATTGATTGCGACAGATCTGATGACCACGGTTGCAATGGAGGGCTAATGGAAAGCGCATTTGAATTCATTAAAAAAAATGGAGGAATAACAACAGAGAATAACTATCCATACAAAGCTAAAGATGAGAGATGCGACATGTTGAAGATGAATGCTCCCGTGGTGACAATTGATGGGCACGAAAGCGTACCAGTGAATGATGAGAGAGCCTTGATGAAGGCAGTTGCTCATCAGCCTGTATCGGTTGCAATAGATGCTGGTGGTTCGGATCTGCAGTTTTACTCAGAGGGAGTGTTTGACGGAGAATGTGGAACAGAGCTAGACCATGGGGTGGCAATAGTGGGGTATGGAACAACCCTGGACGGAACGAAGTACTGGATAGTGAAGAACTCATGGGGAGCTGAATGGGGTGAGAAGGGTTACATAAGGATGGCTCGGGGGATCCAGGCAGCCGAGGGACAGTGTGGTATAGCTATGGAGGCTTCCTACCCAGTCAAGTCCTCCAACAACACTAGAAGAGGATCAATAAAGGATGAACTCTAG 1080 45.83 MKMEKVILVALSLVLVFGLAESFDFDEKDLASEESLWDLYERWRSYHTVSRDLEEKNKRFNVFKENTKHVHKVNQMDKPYKLKLNKFADMTNHEFRSSYGGSKVKHYRMLRGDRRGTGGFMHEKTTYLPPSVDWRKKGAVTGIKDQGKCGSCWAFSTVVGVEGINQIKTKELLSLSEQQLIDCDRSDDHGCNGGLMESAFEFIKKNGGITTENNYPYKAKDERCDMLKMNAPVVTIDGHESVPVNDERALMKAVAHQPVSVAIDAGGSDLQFYSEGVFDGECGTELDHGVAIVGYGTTLDGTKYWIVKNSWGAEWGEKGYIRMARGIQAAEGQCGIAMEASYPVKSSNNTRRGSIKDEL* 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6869576 6871249 - Vvi1g599 Vvi1g599 769799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g599 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 286 296 IPR025660 -
Vvi1g599 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 304 323 IPR025661 -
Vvi1g599 359 PANTHER THIOL PROTEASE SEN102-LIKE 19 350 - -
Vvi1g599 359 Pfam Papain family cysteine protease 128 344 IPR000668 GO:0006508|GO:0008234
Vvi1g599 359 SMART pept_c1 128 344 IPR000668 GO:0006508|GO:0008234
Vvi1g599 359 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Vvi1g599 359 Gene3D Cysteine proteinases 16 346 - -
Vvi1g599 359 SUPERFAMILY Cysteine proteinases 32 344 IPR038765 -
Vvi1g599 359 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Vvi1g599 359 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Vvi1g599 359 PRINTS Papain cysteine protease (C1) family signature 288 298 IPR000668 GO:0006508|GO:0008234
Vvi1g599 359 PRINTS Papain cysteine protease (C1) family signature 304 310 IPR000668 GO:0006508|GO:0008234
Vvi1g599 359 SMART Inhibitor_I29_2 40 95 IPR013201 -
Vvi1g599 359 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 19 350 - -
Vvi1g599 359 CDD Peptidase_C1A 129 343 IPR039417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g599 K16292 CEP, CYSEP; KDEL-tailed cysteine endopeptidase [EC:3.4.22.-] - vvi:100264473 741.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g599 Vvi17g875 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g599 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma05g00052 . Car05g00040 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000347 1 4 1 1 0 9 2 8 9 8 8 9 2 8 4 1 9 1 2 7 7 2 0 4 4 6 1 2 5 2 127